Variant report

Variant	rs9920488
Chromosome Location	chr15:33651316-33651317
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11072413	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11072414	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11072416	0.95[CEU][hapmap];0.84[CHB][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11631882	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28538120	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28626644	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28689180	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9921021	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33644600-33701600	Weak transcription	Aorta	Aorta
2	chr15:33649600-33651600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:33650000-33651400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:33650000-33651400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:33650000-33651400	Enhancers	HMEC	breast
6	chr15:33650000-33651400	Enhancers	HSMM	muscle
7	chr15:33650200-33651400	Enhancers	Brain Substantia Nigra	brain
8	chr15:33650600-33651400	Enhancers	HSMMtube	muscle
9	chr15:33650600-33651600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:33650600-33652400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:33650600-33666800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:33651200-33651400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:33651200-33652800	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:33651200-33654200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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