Variant report
| Variant | rs9920984 |
|---|---|
| Chromosome Location | chr15:55284794-55284795 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs28393187 | 0.91[AMR][1000 genomes] |
| rs28432041 | 0.91[AMR][1000 genomes] |
| rs28434270 | 0.91[AMR][1000 genomes] |
| rs28463889 | 0.91[AMR][1000 genomes] |
| rs28488817 | 0.91[AMR][1000 genomes] |
| rs28507208 | 0.91[AMR][1000 genomes] |
| rs28515575 | 0.91[AMR][1000 genomes] |
| rs28520885 | 0.91[AMR][1000 genomes] |
| rs28532860 | 0.91[AMR][1000 genomes] |
| rs28555415 | 0.91[AMR][1000 genomes] |
| rs28558936 | 0.91[AMR][1000 genomes] |
| rs28607734 | 0.91[AMR][1000 genomes] |
| rs28610247 | 0.82[AMR][1000 genomes] |
| rs28613704 | 0.91[AMR][1000 genomes] |
| rs28652605 | 0.91[AMR][1000 genomes] |
| rs28657557 | 0.82[AMR][1000 genomes] |
| rs28705017 | 0.91[AMR][1000 genomes] |
| rs28714273 | 0.82[AMR][1000 genomes] |
| rs28720044 | 0.82[AMR][1000 genomes] |
| rs28735352 | 0.91[AMR][1000 genomes] |
| rs28796726 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28825704 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7162444 | 0.91[AMR][1000 genomes] |
| rs7162698 | 0.91[AMR][1000 genomes] |
| rs7164958 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7165779 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043176 | chr15:55010228-55563000 | Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv1042741 | chr15:55068022-55622497 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039471 | chr15:55137606-55552555 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 4 | nsv569520 | chr15:55170999-55327439 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:55281000-55286200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
