Variant report

Variant	rs9922097
Chromosome Location	chr16:70783023-70783024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:70781821..70783701-chr16:70789924..70792216,3	K562	blood:
2	chr16:70716977..70719990-chr16:70779925..70783515,4	K562	blood:
3	chr16:70715424..70721545-chr16:70778213..70783786,16	MCF-7	breast:
4	chr16:70781579..70783780-chr16:70785789..70787753,2	K562	blood:
5	chr16:70777980..70780022-chr16:70780577..70783431,2	K562	blood:
6	chr16:70782914..70785498-chr16:70796849..70798570,2	K562	blood:
7	chr16:70728125..70734937-chr16:70778355..70783574,11	MCF-7	breast:
8	chr16:70716857..70722605-chr16:70776377..70783146,15	MCF-7	breast:
9	chr16:70716977..70720923-chr16:70779925..70783515,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000103043	Chromatin interaction
ENSG00000132613	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11862431	0.86[EUR][1000 genomes]
rs56727114	0.86[EUR][1000 genomes]
rs61075342	0.86[EUR][1000 genomes]
rs61756217	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517391	chr16:70666410-70840490	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv457517	chr16:70666722-70840490	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv572945	chr16:70666722-70840490	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv906879	chr16:70677785-70790831	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv906880	chr16:70677785-70796515	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv906889	chr16:70724001-70790831	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv906890	chr16:70740707-70790831	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1061191	chr16:70754975-71201367	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
9	nsv1059478	chr16:70773597-71237055	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70760000-70784200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:70771400-70783800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:70772600-70813400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr16:70773000-70805600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr16:70773000-70815800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr16:70773400-70816200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr16:70777400-70784400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr16:70777800-70783800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr16:70777800-70783800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:70777800-70788400	Enhancers	Psoas Muscle	Psoas
11	chr16:70778200-70784400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr16:70778400-70788200	Enhancers	Liver	Liver
13	chr16:70778600-70783600	Enhancers	HSMMtube	muscle
14	chr16:70778600-70784000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr16:70778600-70784000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr16:70778600-70785000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr16:70778800-70783600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr16:70778800-70784000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr16:70778800-70787000	Enhancers	Fetal Thymus	thymus
20	chr16:70778800-70788000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr16:70779000-70783400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr16:70779000-70783800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr16:70779000-70784600	Enhancers	HSMM	muscle
24	chr16:70779000-70785000	Weak transcription	Primary B cells from cord blood	blood
25	chr16:70779000-70786200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr16:70779000-70786400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr16:70779000-70786400	Enhancers	NHDF-Ad	bronchial
28	chr16:70779000-70788600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr16:70779200-70783200	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr16:70779200-70783600	Enhancers	Placenta	Placenta
31	chr16:70779200-70784600	Enhancers	Pancreas	Pancrea
32	chr16:70779200-70787400	Enhancers	Lung	lung
33	chr16:70779400-70786200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr16:70779400-70786800	Enhancers	Colonic Mucosa	Colon
35	chr16:70779400-70786800	Enhancers	Gastric	stomach
36	chr16:70779400-70787000	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr16:70779400-70787600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr16:70779400-70787800	Enhancers	Esophagus	oesophagus
39	chr16:70779400-70791600	Weak transcription	Dnd41	blood
40	chr16:70779600-70785600	Enhancers	NH-A	brain
41	chr16:70779600-70785800	Enhancers	Brain Anterior Caudate	brain
42	chr16:70779600-70786200	Genic enhancers	Fetal Intestine Small	intestine
43	chr16:70779600-70786600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr16:70779600-70787800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr16:70779600-70788200	Enhancers	Adipose Nuclei	Adipose
46	chr16:70779800-70783200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr16:70779800-70786400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr16:70779800-70787200	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr16:70779800-70788000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr16:70780000-70786600	Enhancers	Rectal Mucosa Donor 29	rectum

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