Variant report

Variant	rs9923273
Chromosome Location	chr16:48513035-48513036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13330237	0.81[AFR][1000 genomes]
rs13339188	0.81[AFR][1000 genomes]
rs16946199	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs28387003	0.81[AFR][1000 genomes]
rs28407298	0.81[AFR][1000 genomes]
rs9925219	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv1800739	chr16:48418505-48560315	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv428658	chr16:48438656-48587750	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv572565	chr16:48509311-48519190	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
5	esv1817281	chr16:48509311-48537421	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1842977	chr16:48509311-48537421	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1849228	chr16:48509311-48537421	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48512000-48513600	Enhancers	Placenta	Placenta
2	chr16:48512000-48514000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr16:48512200-48513200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:48512400-48513400	Enhancers	A549	lung
5	chr16:48512400-48513600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr16:48512400-48513600	Bivalent Enhancer	HepG2	liver
7	chr16:48512400-48514200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr16:48512600-48513400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr16:48512600-48513600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr16:48512600-48514200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr16:48512600-48514200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr16:48512800-48513200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr16:48512800-48513600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr16:48512800-48513800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr16:48512800-48515000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr16:48513000-48514200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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