Variant report

Variant	rs9923996
Chromosome Location	chr16:34209524-34209525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12716730	1.00[AMR][1000 genomes]
rs13339184	1.00[AMR][1000 genomes]
rs1386081	1.00[AMR][1000 genomes]
rs2263415	1.00[AMR][1000 genomes]
rs2450384	1.00[AMR][1000 genomes]
rs2623781	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2623784	1.00[AMR][1000 genomes]
rs2623785	1.00[AMR][1000 genomes]
rs2623787	1.00[AMR][1000 genomes]
rs2630989	1.00[AMR][1000 genomes]
rs2630991	1.00[AMR][1000 genomes]
rs2630992	1.00[AMR][1000 genomes]
rs2630998	1.00[AMR][1000 genomes]
rs2631001	1.00[AMR][1000 genomes]
rs2631002	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs281597	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs281640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28608925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs415001	1.00[AFR][1000 genomes]
rs4616291	1.00[AMR][1000 genomes]
rs4635354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs530437	1.00[AMR][1000 genomes]
rs57537885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7199098	1.00[AMR][1000 genomes]
rs7206318	1.00[AMR][1000 genomes]
rs9922743	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9922854	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9929974	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9939084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823144	chr16:33673394-34211708	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	esv32538	chr16:33935506-34459464	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv431453	chr16:33940200-34760967	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
4	nsv542904	chr16:33942289-34427860	ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	esv3336957	chr16:33946491-34387916	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv906654	chr16:34176875-34320353	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv906655	chr16:34176875-34597156	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	nsv1061110	chr16:34197339-34304555	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1066136	chr16:34197339-34434323	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1064842	chr16:34197339-34472275	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv1063819	chr16:34197339-34492332	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
12	nsv1056658	chr16:34197339-34682514	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	nsv917674	chr16:34201887-34682588	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
14	nsv1067686	chr16:34202088-35147508	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
15	nsv532260	chr16:34202088-35147508	Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:34208200-34211000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr16:34208600-34209600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:34208600-34210000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr16:34209400-34209600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin

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