Variant report

Variant	rs992438
Chromosome Location	chr15:76394419-76394420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2047415	0.85[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2201830	0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs2935970	0.81[EUR][1000 genomes]
rs2935974	0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs2935989	1.00[ASW][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs2955735	0.85[AFR][1000 genomes]
rs2955736	0.85[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2955737	1.00[ASW][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap]
rs2955746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2959839	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2959842	0.82[YRI][hapmap]
rs4886759	0.85[JPT][hapmap]
rs924286	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs992437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76391400-76400200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76391400-76400400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:76393600-76405200	Weak transcription	Right Atrium	heart
4	chr15:76394200-76396800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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