Variant report

Variant	rs9924676
Chromosome Location	chr16:80773884-80773885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr16:80773477-80773941	MCF10A-Er-Src	breast:	n/a	chr16:80773629-80773638
2	FOSL2	chr16:80773366-80773909	MCF-7	breast:	n/a	chr16:80773628-80773640 chr16:80773824-80773834 chr16:80773630-80773638 chr16:80773630-80773639 chr16:80773686-80773695 chr16:80773825-80773833 chr16:80773631-80773638 chr16:80773626-80773637
3	POLR2A	chr16:80773882-80773983	Hela-S3	cervix:	n/a	n/a
4	CTCF	chr16:80773780-80773930	GM12865	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80772543..80774780-chr16:80838144..80840162,2	MCF-7	breast:

Variant related genes	Relation type
CDYL2	TF binding region
ENSG00000166446	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16953873	1.00[AMR][1000 genomes]
rs16953930	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953932	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2316577	1.00[AMR][1000 genomes]
rs28714425	0.80[AFR][1000 genomes]
rs55823544	1.00[AMR][1000 genomes]
rs59123877	1.00[AMR][1000 genomes]
rs7185212	1.00[AMR][1000 genomes]
rs7194240	0.80[YRI][hapmap]
rs7197117	1.00[AMR][1000 genomes]
rs7200350	1.00[AMR][1000 genomes]
rs7200653	1.00[AMR][1000 genomes]
rs73595126	1.00[AMR][1000 genomes]
rs73595128	1.00[AMR][1000 genomes]
rs74028399	1.00[AMR][1000 genomes]
rs74028400	1.00[AMR][1000 genomes]
rs74028401	1.00[AMR][1000 genomes]
rs74030410	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74030413	0.80[AFR][1000 genomes]
rs74030414	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74030426	1.00[AMR][1000 genomes]
rs74030430	1.00[AMR][1000 genomes]
rs8059041	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3451298	chr16:80696935-80997389	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv3350075	chr16:80696955-80997359	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542990	chr16:80729797-80918198	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv833301	chr16:80732170-80928751	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1851516	chr16:80766198-80813696	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80767400-80785000	Weak transcription	Placenta	Placenta
2	chr16:80767600-80785200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:80769400-80774600	Weak transcription	Primary T cells from cord blood	blood
4	chr16:80770200-80785000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr16:80771200-80776000	Weak transcription	Brain Angular Gyrus	brain
6	chr16:80773400-80774000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:80773400-80774000	ZNF genes & repeats	Esophagus	oesophagus
8	chr16:80773400-80774200	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr16:80773400-80774200	ZNF genes & repeats	Lung	lung
10	chr16:80773400-80774200	ZNF genes & repeats	Pancreas	Pancrea
11	chr16:80773400-80776800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr16:80773600-80774000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
13	chr16:80773600-80774200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr16:80773800-80774000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr16:80773800-80774200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
16	chr16:80773800-80774200	ZNF genes & repeats	NHEK	skin
17	chr16:80773800-80774400	ZNF genes & repeats	Hela-S3	cervix
18	chr16:80773800-80775000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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