Variant report

Variant	rs9925046
Chromosome Location	chr16:79604919-79604920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10514462	0.89[EUR][1000 genomes]
rs11639836	0.93[EUR][1000 genomes]
rs11641127	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11641236	0.82[AMR][1000 genomes]
rs11646036	0.94[EUR][1000 genomes]
rs11646316	0.82[AMR][1000 genomes]
rs11648191	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13334764	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17679398	0.84[AMR][1000 genomes]
rs1862723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35056961	0.80[AFR][1000 genomes]
rs6564678	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73587016	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73587019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8053967	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8054214	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8062273	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1060796	chr16:79590617-79609857	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1064997	chr16:79591279-79608618	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1056252	chr16:79591279-79608831	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1063641	chr16:79591279-79614168	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79598800-79605600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr16:79598800-79606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:79599000-79605000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:79600400-79605000	Weak transcription	Liver	Liver
5	chr16:79603400-79605200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:79603600-79605000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr16:79603600-79605200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr16:79604400-79606000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr16:79604600-79605000	Weak transcription	Psoas Muscle	Psoas
10	chr16:79604600-79605200	Enhancers	Ovary	ovary
11	chr16:79604800-79605000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr16:79604800-79605000	Enhancers	Adipose Nuclei	Adipose
13	chr16:79604800-79605400	Enhancers	Colon Smooth Muscle	Colon
14	chr16:79604800-79605600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr16:79604800-79605600	Active TSS	Right Atrium	heart
16	chr16:79604800-79605800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr16:79604800-79607000	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links