Variant report

Variant	rs9925493
Chromosome Location	chr16:72204104-72204105
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1049933	1.00[AMR][1000 genomes]
rs12325171	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12325593	0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332560	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13333207	0.85[AMR][1000 genomes]
rs13334681	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13335854	0.84[YRI][hapmap];0.85[AMR][1000 genomes]
rs13338949	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970697	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973640	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs16973723	0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28455724	0.85[AMR][1000 genomes]
rs28483075	0.85[AMR][1000 genomes]
rs28507713	1.00[AMR][1000 genomes]
rs28557204	1.00[AMR][1000 genomes]
rs28610193	0.85[AMR][1000 genomes]
rs28639994	1.00[AMR][1000 genomes]
rs35184823	1.00[AMR][1000 genomes]
rs4788614	1.00[YRI][hapmap]
rs56978453	1.00[AMR][1000 genomes]
rs57024912	0.85[AMR][1000 genomes]
rs61074815	1.00[AMR][1000 genomes]
rs7184834	0.95[YRI][hapmap]
rs7186117	0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7186448	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7188150	0.94[YRI][hapmap];0.85[AMR][1000 genomes]
rs7188462	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7189506	0.94[YRI][hapmap];0.85[AMR][1000 genomes]
rs7189654	0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7191270	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs7191499	1.00[AMR][1000 genomes]
rs7194569	1.00[AMR][1000 genomes]
rs7202157	0.83[AMR][1000 genomes]
rs7202158	0.83[AMR][1000 genomes]
rs7203195	0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578560	1.00[AMR][1000 genomes]
rs73580679	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582412	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045316	0.94[YRI][hapmap];0.85[AMR][1000 genomes]
rs8047881	1.00[YRI][hapmap]
rs8051438	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8052025	1.00[AMR][1000 genomes]
rs8055216	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056409	0.85[AMR][1000 genomes]
rs8056752	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs8057379	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8061292	0.90[YRI][hapmap];0.85[AMR][1000 genomes]
rs8061439	0.85[AMR][1000 genomes]
rs9921052	0.85[AMR][1000 genomes]
rs9921752	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923961	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9925476	0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932236	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs9933867	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9934521	1.00[AMR][1000 genomes]
rs9940996	0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9972770	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	esv2758430	chr16:71976344-72274347	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	esv2758654	chr16:71976344-72274347	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv428329	chr16:71976344-72274347	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
6	nsv534588	chr16:72078262-72287230	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72194600-72206200	Weak transcription	Primary B cells from cord blood	blood
2	chr16:72199000-72204400	Weak transcription	Fetal Brain Male	brain
3	chr16:72203600-72207600	Enhancers	Fetal Brain Female	brain

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