Variant report

Variant	rs9926879
Chromosome Location	chr16:47922185-47922186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr16:47922030-47922515	A549	lung:	n/a	n/a
2	MAFK	chr16:47922154-47922438	HepG2	liver:	n/a	n/a
3	MYC	chr16:47922113-47922466	MCF10A-Er-Src	breast:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
4	USF2	chr16:47922128-47922484	HepG2	liver:	n/a	chr16:47922287-47922298
5	MAFF	chr16:47921889-47922381	HepG2	liver:	n/a	n/a
6	USF1	chr16:47922159-47922416	HepG2	liver:	n/a	chr16:47922287-47922298
7	JUND	chr16:47921524-47922394	H1-hESC	embryonic stem cell:	n/a	chr16:47922259-47922271 chr16:47921704-47921715 chr16:47921706-47921718 chr16:47921708-47921716
8	TEAD4	chr16:47922134-47922496	H1-hESC	embryonic stem cell:	n/a	chr16:47922224-47922233
9	RCOR1	chr16:47922059-47922464	HepG2	liver:	n/a	n/a
10	FOXA1	chr16:47922124-47922396	T-47D	breast:	n/a	n/a
11	FOSL2	chr16:47921953-47922474	A549	lung:	n/a	chr16:47922259-47922271
12	USF1	chr16:47922078-47922491	SK-N-SH	brain:	n/a	chr16:47922287-47922298
13	USF1	chr16:47922138-47922485	H1-hESC	embryonic stem cell:	n/a	chr16:47922287-47922298
14	JUN	chr16:47922066-47922402	HepG2	liver:	n/a	chr16:47922259-47922271
15	MAX	chr16:47922151-47922503	MCF-7	breast:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
16	TCF12	chr16:47921917-47922593	A549	lung:	n/a	n/a
17	CEBPB	chr16:47922163-47922478	HepG2	liver:	n/a	n/a
18	TEAD4	chr16:47922085-47922458	H1-hESC	embryonic stem cell:	n/a	chr16:47922224-47922233
19	USF2	chr16:47922162-47922407	Hela-S3	cervix:	n/a	chr16:47922287-47922298
20	USF1	chr16:47922174-47922385	A549	lung:	n/a	chr16:47922287-47922298
21	MAX	chr16:47922070-47922511	ECC-1	luminal epithelium:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
22	MAX	chr16:47921713-47922515	H1-hESC	embryonic stem cell:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
23	JUND	chr16:47922011-47922393	HepG2	liver:	n/a	chr16:47922259-47922271
24	USF1	chr16:47922054-47922557	ECC-1	luminal epithelium:	n/a	chr16:47922287-47922298
25	USF1	chr16:47922094-47922509	H1-hESC	embryonic stem cell:	n/a	chr16:47922287-47922298
26	TEAD4	chr16:47921892-47922587	SK-N-SH	brain:	n/a	chr16:47922224-47922233
27	EP300	chr16:47922184-47922431	HepG2	liver:	n/a	n/a
28	JUND	chr16:47922063-47922364	HepG2	liver:	n/a	chr16:47922259-47922271
29	MAX	chr16:47922102-47922569	HepG2	liver:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
30	USF1	chr16:47922095-47922535	A549	lung:	n/a	chr16:47922287-47922298
31	MYC	chr16:47922156-47922457	MCF10A-Er-Src	breast:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
32	MAX	chr16:47921946-47922735	A549	lung:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
33	USF1	chr16:47922161-47922446	A549	lung:	n/a	chr16:47922287-47922298
34	TEAD4	chr16:47922052-47922452	A549	lung:	n/a	chr16:47922224-47922233
35	FOS	chr16:47922154-47922306	MCF10A-Er-Src	breast:	n/a	chr16:47922259-47922271
36	TEAD4	chr16:47921947-47922509	HepG2	liver:	n/a	chr16:47922224-47922233
37	MAX	chr16:47922096-47922500	H1-hESC	embryonic stem cell:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
38	MAX	chr16:47922112-47922484	H1-hESC	embryonic stem cell:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
39	TEAD4	chr16:47922044-47922528	ECC-1	luminal epithelium:	n/a	chr16:47922224-47922233
40	JUN	chr16:47922109-47922401	H1-hESC	embryonic stem cell:	n/a	chr16:47922259-47922271
41	FOSL2	chr16:47922074-47922341	A549	lung:	n/a	chr16:47922259-47922271
42	SP1	chr16:47921885-47922564	A549	lung:	n/a	n/a
43	MAX	chr16:47921971-47922604	A549	lung:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
44	BHLHE40	chr16:47922098-47922501	HepG2	liver:	n/a	n/a
45	MAX	chr16:47922003-47922581	ECC-1	luminal epithelium:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
46	EP300	chr16:47921306-47922333	ECC-1	luminal epithelium:	n/a	n/a
47	MAX	chr16:47922127-47922465	HepG2	liver:	n/a	chr16:47922289-47922298 chr16:47922287-47922300 chr16:47922287-47922302 chr16:47922289-47922298 chr16:47922288-47922298 chr16:47922290-47922297 chr16:47922288-47922299
48	GATA3	chr16:47922083-47922469	T-47D	breast:	n/a	n/a
49	ARID3A	chr16:47922098-47922448	HepG2	liver:	n/a	n/a
50	EP300	chr16:47922078-47922417	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000261325	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1985323	0.83[ASW][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap]
rs6500353	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6500354	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7205450	0.86[AFR][1000 genomes]
rs8048189	0.86[AFR][1000 genomes]
rs9938295	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv833218	chr16:47869819-48051745	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47917600-47923800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr16:47917800-47922800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr16:47918000-47922800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:47918800-47922200	Weak transcription	Ovary	ovary
5	chr16:47918800-47923400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr16:47918800-47926600	Weak transcription	Fetal Brain Female	brain
7	chr16:47919400-47923800	Weak transcription	Fetal Brain Male	brain
8	chr16:47920000-47922800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr16:47920200-47922200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr16:47920200-47922600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr16:47920200-47922800	Enhancers	HMEC	breast
12	chr16:47920200-47923000	Enhancers	NHEK	skin
13	chr16:47920400-47922200	Enhancers	Brain Germinal Matrix	brain
14	chr16:47920400-47922400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr16:47920400-47922400	Enhancers	NH-A	brain
16	chr16:47920400-47922600	Enhancers	Placenta	Placenta
17	chr16:47920400-47922800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr16:47920400-47922800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr16:47920400-47922800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr16:47920400-47922800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr16:47920400-47922800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr16:47920600-47922200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr16:47920600-47923600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr16:47920800-47922800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr16:47921000-47922800	Enhancers	HSMMtube	muscle
26	chr16:47921200-47922400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr16:47921200-47922800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr16:47921200-47922800	Enhancers	HSMM	muscle
29	chr16:47921400-47922200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr16:47921400-47922200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr16:47921400-47922200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr16:47921400-47922400	Enhancers	Psoas Muscle	Psoas
33	chr16:47921400-47922800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr16:47921600-47922600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr16:47921600-47922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr16:47921600-47922600	Enhancers	Fetal Lung	lung
37	chr16:47921600-47931400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr16:47921800-47922200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr16:47921800-47922600	Flanking Active TSS	A549	lung
40	chr16:47921800-47922800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr16:47921800-47923800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr16:47922000-47922800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr16:47922000-47922800	Enhancers	Osteobl	bone
44	chr16:47922000-47923000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr16:47922000-47923000	Enhancers	HepG2	liver
46	chr16:47922000-47924000	Enhancers	HUES48 Cell Line	embryonic stem cell

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