Variant report

Variant	rs9928209
Chromosome Location	chr16:80157469-80157470
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12926289	0.81[AMR][1000 genomes]
rs1351153	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1545759	0.84[ASN][1000 genomes]
rs4889106	0.81[AMR][1000 genomes]
rs58957478	0.82[ASN][1000 genomes]
rs6564734	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80151800-80159600	Weak transcription	Adipose Nuclei	Adipose
2	chr16:80156000-80157800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:80156200-80158000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:80156200-80158000	Enhancers	NH-A	brain
5	chr16:80156400-80157600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:80156400-80159000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr16:80156400-80159000	Weak transcription	HSMMtube	muscle
8	chr16:80156600-80157600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr16:80156600-80157800	Enhancers	Osteobl	bone
10	chr16:80157000-80158000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr16:80157200-80159200	Weak transcription	Ovary	ovary
12	chr16:80157400-80158000	Enhancers	NHDF-Ad	bronchial
13	chr16:80157400-80159200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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