Variant report

Variant	rs9928438
Chromosome Location	chr16:81483167-81483168
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81480566..81483421-chr16:81511394..81514320,4	MCF-7	breast:
2	chr16:81480171..81484417-chr16:81492553..81495426,4	MCF-7	breast:
3	chr16:81481928..81485099-chr16:81576354..81580756,4	K562	blood:
4	chr16:81273374..81275112-chr16:81481220..81483509,2	MCF-7	breast:
5	chr16:81434998..81437971-chr16:81482154..81484687,2	K562	blood:
6	chr16:81482289..81484303-chr16:81490604..81493407,2	MCF-7	breast:
7	chr16:81434018..81436498-chr16:81482154..81484633,2	K562	blood:
8	chr16:81437645..81439695-chr16:81483087..81485039,2	MCF-7	breast:

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9938703	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81480600-81483200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:81480600-81483200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:81480600-81483200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr16:81480600-81486400	Enhancers	Small Intestine	intestine
5	chr16:81480600-81487200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr16:81480600-81487600	Transcr. at gene 5' and 3'	A549	lung
7	chr16:81480800-81483200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr16:81480800-81483200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr16:81480800-81483200	Flanking Active TSS	Brain Germinal Matrix	brain
10	chr16:81480800-81484000	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr16:81480800-81484000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr16:81480800-81484200	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr16:81480800-81485600	Weak transcription	Right Ventricle	heart
14	chr16:81480800-81487600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr16:81481200-81483800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr16:81481200-81484000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr16:81481200-81484000	Enhancers	Pancreas	Pancrea
18	chr16:81481200-81484200	Enhancers	Fetal Thymus	thymus
19	chr16:81481200-81485400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr16:81481200-81487400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr16:81481400-81483200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr16:81481400-81483200	Enhancers	Fetal Kidney	kidney
23	chr16:81481400-81483200	Enhancers	Fetal Lung	lung
24	chr16:81481400-81483800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr16:81481400-81484000	Enhancers	Thymus	Thymus
26	chr16:81481400-81485200	Enhancers	Primary T cells from cord blood	blood
27	chr16:81481400-81491200	Weak transcription	NHLF	lung
28	chr16:81481400-81496400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr16:81481600-81483200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr16:81481600-81483200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr16:81481600-81483200	Genic enhancers	Fetal Stomach	stomach
32	chr16:81481600-81483200	Enhancers	HUVEC	blood vessel
33	chr16:81481600-81483800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr16:81481600-81483800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr16:81481600-81485200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr16:81481600-81486400	Enhancers	Primary hematopoietic stem cells	blood
37	chr16:81481600-81486800	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr16:81481800-81485200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr16:81481800-81485200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr16:81481800-81487400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr16:81482000-81484000	Enhancers	Primary B cells from cord blood	blood
42	chr16:81482000-81484400	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr16:81482000-81507000	Weak transcription	Fetal Heart	heart
44	chr16:81482200-81483400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr16:81482200-81483600	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr16:81482200-81485200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr16:81482200-81485400	Weak transcription	Ovary	ovary
48	chr16:81482200-81485400	Weak transcription	Hela-S3	cervix
49	chr16:81482200-81487600	Enhancers	Stomach Mucosa	stomach
50	chr16:81482400-81483200	Enhancers	HUES6 Cell Line	embryonic stem cell

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