Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80044369..80046184-chr16:80046733..80049485,2	MCF-7	breast:
2	chr16:80019688..80022858-chr16:80044337..80047415,3	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12447399	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12921341	0.91[AFR][1000 genomes]
rs12922708	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4341754	0.88[AFR][1000 genomes]
rs4445914	0.84[AFR][1000 genomes]
rs4493049	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4889066	0.84[EUR][1000 genomes]
rs8057036	0.93[AFR][1000 genomes]
rs8063712	0.86[AFR][1000 genomes]
rs9921198	0.88[AFR][1000 genomes]
rs9923939	0.90[AFR][1000 genomes]
rs9923943	0.90[AFR][1000 genomes]
rs9924079	0.92[AFR][1000 genomes]
rs9924359	0.93[AFR][1000 genomes]
rs9926410	0.91[AFR][1000 genomes]
rs9927433	0.96[AFR][1000 genomes]
rs9929923	0.81[AFR][1000 genomes]
rs9930005	0.92[AFR][1000 genomes]
rs9931548	0.93[AFR][1000 genomes]
rs9932265	0.93[AFR][1000 genomes]
rs9932617	0.95[AFR][1000 genomes]
rs9934311	0.88[AFR][1000 genomes]
rs9935292	0.99[AFR][1000 genomes]
rs9936732	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv520894	chr16:80042806-80050270	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80040400-80057200	Weak transcription	Esophagus	oesophagus
2	chr16:80041800-80046600	Weak transcription	Fetal Stomach	stomach

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