Variant report
| Variant | rs9930277 |
|---|---|
| Chromosome Location | chr16:58728020-58728021 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs13329892 | 1.00[EUR][1000 genomes] |
| rs13334745 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13334922 | 1.00[EUR][1000 genomes] |
| rs13335464 | 1.00[EUR][1000 genomes] |
| rs13335851 | 1.00[EUR][1000 genomes] |
| rs13335953 | 1.00[EUR][1000 genomes] |
| rs13337650 | 1.00[EUR][1000 genomes] |
| rs13339352 | 1.00[EUR][1000 genomes] |
| rs28394663 | 1.00[EUR][1000 genomes] |
| rs28468502 | 1.00[EUR][1000 genomes] |
| rs28472773 | 1.00[EUR][1000 genomes] |
| rs28530777 | 1.00[EUR][1000 genomes] |
| rs28533067 | 1.00[EUR][1000 genomes] |
| rs28613241 | 1.00[EUR][1000 genomes] |
| rs28644182 | 1.00[EUR][1000 genomes] |
| rs28744389 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34698978 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7186446 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7193580 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73550817 | 1.00[EUR][1000 genomes] |
| rs73550821 | 1.00[EUR][1000 genomes] |
| rs8048686 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9746055 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9923409 | 1.00[EUR][1000 genomes] |
| rs9924494 | 1.00[EUR][1000 genomes] |
| rs9926053 | 1.00[EUR][1000 genomes] |
| rs9938192 | 1.00[EUR][1000 genomes] |
| rs9938386 | 1.00[EUR][1000 genomes] |
| rs9939324 | 1.00[EUR][1000 genomes] |
| rs9941013 | 1.00[EUR][1000 genomes] |
| rs9941175 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758427 | chr16:58579005-58876037 | Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | esv2758650 | chr16:58579005-58876037 | ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv510686 | chr16:58646119-58765894 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:58719000-58739600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr16:58719200-58741800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
