Variant report

Variant	rs9932049
Chromosome Location	chr16:81995553-81995554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28376393	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28494471	0.82[AFR][1000 genomes]
rs4888200	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81962600-81995800	Weak transcription	Small Intestine	intestine
2	chr16:81982600-81996600	Weak transcription	Fetal Stomach	stomach
3	chr16:81982600-82007000	Weak transcription	Gastric	stomach
4	chr16:81985000-81995600	Strong transcription	GM12878-XiMat	blood
5	chr16:81985400-81995600	Strong transcription	Primary B cells from cord blood	blood
6	chr16:81990400-81996400	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr16:81990600-81995600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr16:81993400-81997200	Weak transcription	Lung	lung
9	chr16:81993400-81999600	Weak transcription	Liver	Liver
10	chr16:81993600-81995600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr16:81993800-81995600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr16:81994000-81995600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr16:81994000-81995800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr16:81994000-81995800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr16:81994000-81995800	Weak transcription	Spleen	Spleen
16	chr16:81994400-81996200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr16:81994800-82000800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr16:81995000-81996600	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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