Variant report

Variant	rs9932785
Chromosome Location	chr16:79788531-79788532
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79785733..79789270-chr16:79790871..79794406,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28682562	0.87[AFR][1000 genomes]
rs4302048	0.89[AMR][1000 genomes]
rs74037611	0.87[AMR][1000 genomes]
rs74037612	0.87[AMR][1000 genomes]
rs74037622	0.87[AMR][1000 genomes]
rs8058180	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2755409	chr16:79776699-79816299	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79783600-79789000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr16:79785000-79788600	Enhancers	NHDF-Ad	bronchial
3	chr16:79785000-79789200	Enhancers	Fetal Intestine Small	intestine
4	chr16:79785000-79789400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:79785200-79789200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:79785200-79789200	Enhancers	Fetal Intestine Large	intestine
7	chr16:79786200-79789400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr16:79786200-79791800	Weak transcription	Esophagus	oesophagus
9	chr16:79786600-79789000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr16:79786600-79789200	Enhancers	Fetal Thymus	thymus
11	chr16:79787000-79789200	Enhancers	Colon Smooth Muscle	Colon
12	chr16:79787000-79792200	Weak transcription	NHLF	lung
13	chr16:79787200-79789200	Enhancers	Fetal Lung	lung
14	chr16:79787400-79788600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr16:79787400-79788800	Enhancers	Rectal Smooth Muscle	rectum
16	chr16:79787400-79792400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr16:79787600-79788600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr16:79787600-79788600	Weak transcription	Small Intestine	intestine
19	chr16:79787600-79789200	Enhancers	Adipose Nuclei	Adipose
20	chr16:79787600-79789200	Enhancers	Fetal Stomach	stomach
21	chr16:79787800-79789200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr16:79787800-79789200	Enhancers	Primary T cells from cord blood	blood
23	chr16:79787800-79792600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr16:79788000-79788800	Enhancers	Fetal Kidney	kidney
25	chr16:79788000-79789200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr16:79788000-79789200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr16:79788200-79789000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr16:79788200-79789000	Enhancers	Osteobl	bone
29	chr16:79788200-79789400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr16:79788200-79789400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr16:79788400-79788600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr16:79788400-79788600	Enhancers	Stomach Smooth Muscle	stomach
33	chr16:79788400-79789000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr16:79788400-79789000	Enhancers	Right Atrium	heart
35	chr16:79788400-79789200	Enhancers	Primary hematopoietic stem cells	blood
36	chr16:79788400-79789200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr16:79788400-79789200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr16:79788400-79789200	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr16:79788400-79789200	Enhancers	Fetal Muscle Leg	muscle
40	chr16:79788400-79789200	Enhancers	HMEC	breast
41	chr16:79788400-79789400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr16:79788400-79789400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr16:79788400-79789400	Enhancers	NHEK	skin

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