Variant report

Variant	rs9933931
Chromosome Location	chr16:75897110-75897111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11149861	0.83[AMR][1000 genomes]
rs28647452	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4262972	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4267335	0.83[AMR][1000 genomes]
rs4349174	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4548903	0.85[AMR][1000 genomes]
rs4991730	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55734388	0.82[EUR][1000 genomes]
rs6564291	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6564292	0.85[AMR][1000 genomes]
rs6564293	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7186048	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7187903	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7192895	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7200970	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7203185	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7203198	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7203789	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73618806	0.83[AMR][1000 genomes]
rs73618809	0.83[AMR][1000 genomes]
rs73618810	0.83[AMR][1000 genomes]
rs8047559	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8047752	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8053897	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9924549	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1064607	chr16:75787129-76449101	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1065794	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv542961	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv3416058	chr16:75863360-76086224	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1057858	chr16:75895639-76054551	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75894800-75901600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:75894800-75902000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:75895200-75897200	Weak transcription	Brain Germinal Matrix	brain
4	chr16:75896000-75901800	Weak transcription	Brain Anterior Caudate	brain
5	chr16:75896000-75902000	Weak transcription	Brain Angular Gyrus	brain
6	chr16:75896200-75897400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr16:75896200-75897400	Weak transcription	Brain Hippocampus Middle	brain
8	chr16:75896200-75901800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr16:75896200-75901800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr16:75896200-75902000	Weak transcription	Brain Substantia Nigra	brain
11	chr16:75896200-75902200	Weak transcription	Brain Inferior Temporal Lobe	brain

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