Variant report

Variant	rs9934599
Chromosome Location	chr16:70676534-70676535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11859067	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11865804	0.86[MKK][hapmap];0.96[YRI][hapmap]
rs12923645	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12928493	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12930471	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13336931	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16970406	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28630970	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34234103	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34493949	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34495668	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34532099	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34580834	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34714789	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34960234	0.94[EUR][1000 genomes]
rs35106114	0.81[EUR][1000 genomes]
rs56799017	0.84[ASN][1000 genomes]
rs71401819	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9925191	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517391	chr16:70666410-70840490	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv457517	chr16:70666722-70840490	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv572945	chr16:70666722-70840490	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70666000-70679000	Weak transcription	Spleen	Spleen
2	chr16:70669400-70679000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr16:70669600-70679000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:70669600-70679400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:70669600-70687800	Weak transcription	Right Atrium	heart
6	chr16:70670600-70680000	Weak transcription	Fetal Intestine Small	intestine
7	chr16:70673600-70680200	Weak transcription	Brain Anterior Caudate	brain
8	chr16:70673600-70680200	Weak transcription	HSMMtube	muscle
9	chr16:70673600-70683200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr16:70673600-70684000	Weak transcription	Esophagus	oesophagus
11	chr16:70673800-70680200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr16:70673800-70680200	Weak transcription	Fetal Stomach	stomach
13	chr16:70673800-70682800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:70674000-70680200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr16:70674000-70680200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr16:70674200-70680200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr16:70674200-70680600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:70675200-70679000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr16:70676000-70676600	Bivalent Enhancer	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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