Variant report

Variant	rs9935017
Chromosome Location	chr16:79673338-79673339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12599059	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12933824	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12934717	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35941061	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67361426	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7193129	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7196770	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72808503	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9923929	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79666400-79682200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:79666800-79673400	Weak transcription	NHEK	skin
3	chr16:79668600-79674800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr16:79670000-79673600	Weak transcription	Esophagus	oesophagus
5	chr16:79670200-79673800	Weak transcription	HSMMtube	muscle
6	chr16:79672200-79673600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr16:79672400-79675000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:79672600-79673600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr16:79672600-79674400	Weak transcription	Ovary	ovary
10	chr16:79672800-79674600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr16:79673000-79673800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr16:79673000-79674400	Enhancers	Fetal Thymus	thymus
13	chr16:79673200-79674600	Enhancers	Primary hematopoietic stem cells	blood
14	chr16:79673200-79674600	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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