Variant report

Variant	rs9935214
Chromosome Location	chr16:47000337-47000338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:46995915..47000347-chr16:47005610..47008323,5	MCF-7	breast:
2	chr16:46999093..47003102-chr16:47005351..47007966,5	MCF-7	breast:
3	chr16:46995618..46998469-chr16:46998701..47003267,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261173	Chromatin interaction
ENSG00000069345	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6598785	1.00[AFR][1000 genomes]
rs9925722	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059456	chr16:46463770-47307580	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1066115	chr16:46463770-47318415	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1059147	chr16:46500740-47010960	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv542909	chr16:46500740-47010960	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46977600-47006200	Weak transcription	Stomach Mucosa	stomach
2	chr16:46987600-47003400	Strong transcription	Liver	Liver
3	chr16:46988000-47002800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr16:46988000-47003000	Strong transcription	Stomach Smooth Muscle	stomach
5	chr16:46988000-47003200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:46988000-47003200	Strong transcription	Brain Germinal Matrix	brain
7	chr16:46988000-47004200	Strong transcription	Fetal Thymus	thymus
8	chr16:46988000-47004400	Strong transcription	Primary T cells from cord blood	blood
9	chr16:46988000-47005400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr16:46988000-47005400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr16:46988000-47005600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr16:46988000-47005800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:46988200-47005400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr16:46988400-47002400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr16:46988400-47004600	Strong transcription	Thymus	Thymus
16	chr16:46988400-47005200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr16:46988400-47005800	Strong transcription	Fetal Muscle Leg	muscle
18	chr16:46988400-47006000	Strong transcription	Placenta	Placenta
19	chr16:46988600-47002600	Strong transcription	NH-A	brain
20	chr16:46988600-47003200	Strong transcription	Dnd41	blood
21	chr16:46988600-47003400	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr16:46988600-47004200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr16:46988600-47005200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr16:46988600-47005200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr16:46988600-47005400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr16:46988600-47005800	Strong transcription	Fetal Intestine Large	intestine
27	chr16:46988800-47004200	Strong transcription	Fetal Brain Female	brain
28	chr16:46990000-47005800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr16:46990600-47003600	Strong transcription	Spleen	Spleen
30	chr16:46990600-47005800	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr16:46991000-47004200	Strong transcription	Lung	lung
32	chr16:46994000-47005200	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr16:46994200-47005400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr16:46994200-47005800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr16:46994400-47005200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr16:46995200-47005000	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr16:46995200-47005200	Strong transcription	NHEK	skin
38	chr16:46995400-47004000	Strong transcription	HUVEC	blood vessel
39	chr16:46995400-47005200	Strong transcription	Fetal Lung	lung
40	chr16:46995400-47005800	Strong transcription	HSMM	muscle
41	chr16:46995600-47004400	Strong transcription	Fetal Kidney	kidney
42	chr16:46995800-47003000	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr16:46995800-47003400	Strong transcription	Left Ventricle	heart
44	chr16:46995800-47003800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr16:46995800-47005400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
46	chr16:46996000-47002000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr16:46996000-47006000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr16:46996200-47002600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr16:46996200-47003800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr16:46996200-47005800	Strong transcription	Fetal Stomach	stomach

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