Variant report

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr16:71525055-71527532	PBDE	blood:	n/a	n/a
2	IRF1	chr16:71525846-71526847	K562	blood:	n/a	n/a
3	TAL1	chr16:71525695-71527129	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71525366..71527670-chr16:71529171..71530675,2	K562	blood:
2	chr16:71518517..71520034-chr16:71526306..71528350,2	K562	blood:
3	chr16:71516946..71520167-chr16:71520825..71527785,6	MCF-7	breast:
4	chr16:71494254..71496251-chr16:71526160..71529002,3	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4275857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8044168	0.83[GIH][hapmap]
rs8049040	0.87[GIH][hapmap]
rs8060844	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv906892	chr16:71526720-71570413	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9936265	TK2	cis	parietal	SCAN
rs9936265	ZNF23	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71525200-71527200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr16:71525200-71527400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:71525400-71526800	Enhancers	Primary hematopoietic stem cells	blood
4	chr16:71525800-71527000	Flanking Active TSS	K562	blood
5	chr16:71526400-71527000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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