Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10006156	0.82[ASN][1000 genomes]
rs10034605	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857102	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941585	0.80[EUR][1000 genomes]
rs12648286	0.82[EUR][1000 genomes]
rs1506550	0.83[EUR][1000 genomes]
rs2135479	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2174623	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28683639	0.82[ASN][1000 genomes]
rs3890594	0.84[EUR][1000 genomes]
rs4000844	0.95[ASN][1000 genomes]
rs4321650	0.95[ASN][1000 genomes]
rs57540391	0.82[EUR][1000 genomes]
rs6816273	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6823943	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6830784	0.82[ASN][1000 genomes]
rs6837961	0.82[ASN][1000 genomes]
rs7661684	0.95[ASN][1000 genomes]
rs7674739	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9307548	0.95[ASN][1000 genomes]
rs9884327	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125712000-125712400	Enhancers	Brain Germinal Matrix	brain

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