Variant report

Variant	rs9937356
Chromosome Location	chr16:79686908-79686909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79685953..79688052-chr16:79693172..79695514,2	MCF-7	breast:
2	chr16:79672405..79675476-chr16:79684615..79687240,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28655727	1.00[AMR][1000 genomes]
rs60342831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9927599	1.00[AMR][1000 genomes]
rs9939274	1.00[AMR][1000 genomes]
rs9939361	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv3422393	chr16:79685851-79690149	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79676400-79687800	Weak transcription	Fetal Kidney	kidney
2	chr16:79682200-79687400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:79684800-79688200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:79685000-79688000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr16:79685000-79688200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:79685400-79688000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr16:79685400-79688000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:79685600-79687200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr16:79685600-79687200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr16:79685600-79687200	Weak transcription	Lung	lung
11	chr16:79685600-79687400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr16:79685600-79687400	Weak transcription	NHDF-Ad	bronchial
13	chr16:79685600-79687600	Weak transcription	Ovary	ovary
14	chr16:79685600-79690400	Weak transcription	HSMMtube	muscle
15	chr16:79685600-79692600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr16:79685800-79687200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr16:79685800-79687200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr16:79685800-79687200	Weak transcription	Adipose Nuclei	Adipose
19	chr16:79685800-79687200	Weak transcription	Brain Hippocampus Middle	brain
20	chr16:79685800-79687200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr16:79685800-79687200	Weak transcription	Stomach Mucosa	stomach
22	chr16:79685800-79691000	Weak transcription	HSMM	muscle
23	chr16:79685800-79691400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr16:79685800-79691800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr16:79685800-79691800	Weak transcription	NH-A	brain
26	chr16:79686000-79690600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr16:79686200-79687800	Enhancers	Fetal Lung	lung
28	chr16:79686200-79688000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr16:79686200-79688000	Enhancers	Fetal Muscle Leg	muscle
30	chr16:79686400-79688000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr16:79686400-79688200	Enhancers	Primary hematopoietic stem cells	blood
32	chr16:79686400-79688200	Enhancers	Fetal Stomach	stomach
33	chr16:79686400-79688200	Enhancers	Right Atrium	heart
34	chr16:79686400-79689400	Enhancers	Fetal Thymus	thymus
35	chr16:79686600-79687000	Weak transcription	HMEC	breast
36	chr16:79686600-79687600	Enhancers	Brain Germinal Matrix	brain
37	chr16:79686600-79688400	Enhancers	Fetal Heart	heart
38	chr16:79686600-79688800	Enhancers	NHEK	skin
39	chr16:79686600-79689000	Enhancers	Fetal Intestine Small	intestine
40	chr16:79686800-79687000	Enhancers	Left Ventricle	heart
41	chr16:79686800-79687000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
42	chr16:79686800-79687800	Enhancers	Stomach Smooth Muscle	stomach
43	chr16:79686800-79688200	Enhancers	Fetal Intestine Large	intestine
44	chr16:79686800-79688400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr16:79686800-79689000	Enhancers	Esophagus	oesophagus

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