Variant report

Variant	rs9937546
Chromosome Location	chr16:73003719-73003720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73002331..73005411-chr16:73011017..73015250,3	MCF-7	breast:
2	chr16:72993373..72995367-chr16:73001879..73004852,2	MCF-7	breast:
3	chr16:73003315..73007781-chr16:73081251..73084259,4	MCF-7	breast:
4	chr16:73001523..73004186-chr16:73004949..73006543,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction

rs_ID	r²[population]
rs11640395	1.00[JPT][hapmap]
rs16971465	1.00[JPT][hapmap]
rs2040507	0.85[JPT][hapmap]
rs4414519	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9927735	1.00[JPT][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs9937546	COG4	cis	parietal	SCAN

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72973400-73006400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:72987200-73012200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:72993400-73019600	Weak transcription	Hela-S3	cervix
4	chr16:72993600-73003800	Weak transcription	Aorta	Aorta
5	chr16:72993600-73010400	Weak transcription	GM12878-XiMat	blood
6	chr16:72993600-73019000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr16:72993800-73009800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr16:72994200-73004400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr16:72994200-73004400	Weak transcription	Esophagus	oesophagus
10	chr16:72994200-73006200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr16:72994200-73009600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr16:72994400-73012400	Weak transcription	A549	lung
13	chr16:72994600-73008000	Weak transcription	Lung	lung
14	chr16:72994600-73008400	Weak transcription	Ovary	ovary
15	chr16:72994800-73010400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr16:72995400-73003800	Weak transcription	Right Atrium	heart
17	chr16:72995400-73005200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr16:72995600-73006200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr16:72995600-73011000	Weak transcription	Right Ventricle	heart
20	chr16:72996000-73008000	Weak transcription	Left Ventricle	heart
21	chr16:72996000-73011000	Weak transcription	Placenta	Placenta
22	chr16:72996000-73012200	Weak transcription	Spleen	Spleen
23	chr16:72996200-73017800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr16:72996400-73008200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr16:72996400-73012400	Weak transcription	Small Intestine	intestine
26	chr16:72996600-73010000	Weak transcription	Fetal Intestine Large	intestine
27	chr16:72996800-73018800	Weak transcription	NHLF	lung
28	chr16:72997000-73003800	Weak transcription	Pancreas	Pancrea
29	chr16:72997000-73017800	Weak transcription	HSMMtube	muscle
30	chr16:72998200-73008000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr16:72998400-73008200	Weak transcription	NH-A	brain
32	chr16:72998400-73018800	Weak transcription	Osteobl	bone
33	chr16:73001200-73019000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr16:73001400-73006200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr16:73001400-73007600	Weak transcription	Fetal Intestine Small	intestine
36	chr16:73001400-73008400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:73001800-73004000	Enhancers	HepG2	liver
38	chr16:73001800-73004200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr16:73002000-73004000	Enhancers	Adipose Nuclei	Adipose
40	chr16:73002200-73019000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr16:73002600-73003800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr16:73002800-73005000	Enhancers	Colon Smooth Muscle	Colon
43	chr16:73003000-73003800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr16:73003000-73004200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr16:73003000-73004400	Enhancers	Fetal Stomach	stomach
46	chr16:73003000-73005000	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr16:73003000-73005600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr16:73003000-73007400	Enhancers	Psoas Muscle	Psoas
49	chr16:73003000-73018000	Weak transcription	Brain Substantia Nigra	brain
50	chr16:73003200-73003800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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