Variant report

Variant	rs9942211
Chromosome Location	chr4:15723970-15723971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15669572..15671315-chr4:15723195..15724968,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10011868	1.00[CEU][hapmap]
rs10516290	1.00[CEU][hapmap]
rs10516291	1.00[CEU][hapmap]
rs1058212	1.00[CEU][hapmap]
rs10939630	1.00[CEU][hapmap]
rs10939632	0.82[EUR][1000 genomes]
rs11931532	1.00[CEU][hapmap]
rs11944132	1.00[CEU][hapmap]
rs12642189	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12645693	1.00[CEU][hapmap]
rs12646331	1.00[CEU][hapmap]
rs16892141	1.00[CEU][hapmap]
rs16892263	1.00[CEU][hapmap]
rs16892271	1.00[CEU][hapmap]
rs16892272	1.00[CEU][hapmap]
rs16892276	1.00[CEU][hapmap]
rs16892283	1.00[CEU][hapmap]
rs16892287	1.00[CEU][hapmap]
rs16892289	1.00[CEU][hapmap]
rs16898413	1.00[CEU][hapmap]
rs1807250	0.82[EUR][1000 genomes]
rs2302463	1.00[CEU][hapmap]
rs2302464	1.00[CEU][hapmap]
rs35016714	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4267735	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4321629	1.00[CEU][hapmap]
rs4395498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4435745	1.00[CEU][hapmap]
rs4498133	1.00[CEU][hapmap]
rs4502676	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6811179	1.00[CEU][hapmap]
rs6822515	0.82[EUR][1000 genomes]
rs6828144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6835705	1.00[CEU][hapmap]
rs6844968	1.00[CEU][hapmap]
rs73121395	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7672395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7688526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs955410	1.00[CEU][hapmap]
rs9790670	1.00[CEU][hapmap]
rs9942247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9942275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv10459	chr4:15721343-15724582	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15705000-15735200	Weak transcription	Lung	lung
2	chr4:15705200-15731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:15705400-15727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:15706000-15727800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:15707400-15742800	Weak transcription	Primary B cells from cord blood	blood
6	chr4:15708800-15739400	Weak transcription	Ovary	ovary
7	chr4:15709400-15731800	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:15716600-15725200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:15716800-15727600	Weak transcription	Brain Anterior Caudate	brain
10	chr4:15718200-15725000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:15718200-15725600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:15719200-15724800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:15719400-15735800	Weak transcription	NHDF-Ad	bronchial
14	chr4:15719600-15724200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:15719600-15724600	Weak transcription	Hela-S3	cervix
16	chr4:15719600-15725200	Weak transcription	Left Ventricle	heart
17	chr4:15719800-15725400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:15719800-15726400	Weak transcription	Fetal Lung	lung
19	chr4:15719800-15736600	Weak transcription	Spleen	Spleen
20	chr4:15720000-15725400	Weak transcription	NHLF	lung
21	chr4:15720000-15725600	Weak transcription	NH-A	brain
22	chr4:15720200-15727400	Strong transcription	Fetal Intestine Large	intestine
23	chr4:15720400-15725400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:15720600-15729000	Strong transcription	Duodenum Mucosa	Duodenum
25	chr4:15720800-15724600	Strong transcription	Fetal Intestine Small	intestine
26	chr4:15720800-15727200	Weak transcription	Colonic Mucosa	Colon
27	chr4:15721000-15724000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:15721000-15724600	Weak transcription	Adipose Nuclei	Adipose
29	chr4:15721000-15726400	Weak transcription	Fetal Stomach	stomach
30	chr4:15721000-15726400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr4:15721000-15727000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:15721000-15728800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:15721000-15729600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:15721400-15728800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:15721600-15724600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:15721600-15725400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:15721600-15725600	Weak transcription	HepG2	liver
38	chr4:15721600-15726600	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:15723000-15734600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr4:15723000-15743000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr4:15723000-15744600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr4:15723200-15724000	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr4:15723600-15724800	Strong transcription	Osteobl	bone
44	chr4:15723600-15725800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr4:15723800-15726000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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