Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1430921	0.81[EUR][1000 genomes]
rs1594436	0.93[EUR][1000 genomes]
rs1964354	0.81[EUR][1000 genomes]
rs28584921	0.90[EUR][1000 genomes]
rs639272	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs643272	0.81[EUR][1000 genomes]
rs647853	0.81[EUR][1000 genomes]
rs6507493	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655464	0.92[ASN][1000 genomes]
rs657288	0.92[EUR][1000 genomes]
rs7230753	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7239418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7239950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7240077	0.94[EUR][1000 genomes]
rs7244619	0.93[EUR][1000 genomes]
rs7245308	0.81[EUR][1000 genomes]
rs725744	0.94[EUR][1000 genomes]
rs8089843	0.80[EUR][1000 genomes]
rs9304274	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9807482	0.81[EUR][1000 genomes]
rs9955757	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40177400-40180000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr18:40178200-40179600	Enhancers	Adipose Nuclei	Adipose
3	chr18:40178400-40179800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: