Variant report

Variant	rs9945393
Chromosome Location	chr18:25761847-25761848
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11564340	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1231239	0.84[ASW][hapmap]
rs17495514	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17537079	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2155765	0.82[ASW][hapmap]
rs2191635	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34738719	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9304515	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9956467	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9960183	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25758600-25763800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:25758800-25762400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:25758800-25763200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr18:25758800-25763600	Weak transcription	Liver	Liver
5	chr18:25758800-25763600	Weak transcription	HepG2	liver
6	chr18:25758800-25763600	Weak transcription	HSMMtube	muscle
7	chr18:25759000-25763200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:25759000-25763600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr18:25759000-25763600	Weak transcription	HUVEC	blood vessel
10	chr18:25759000-25766000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr18:25759200-25762600	Weak transcription	Osteobl	bone
12	chr18:25759200-25763200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr18:25759200-25763600	Weak transcription	Right Ventricle	heart
14	chr18:25759200-25765800	Weak transcription	Right Atrium	heart
15	chr18:25759200-25778000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr18:25759400-25763800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr18:25760200-25763400	Weak transcription	NH-A	brain
18	chr18:25760400-25763600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr18:25760800-25763000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr18:25761000-25762400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr18:25761000-25764000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr18:25761400-25762200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:25761600-25762200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr18:25761600-25762200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr18:25761600-25762600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr18:25761600-25762600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr18:25761600-25763800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr18:25761800-25762000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr18:25761800-25762200	Weak transcription	A549	lung
30	chr18:25761800-25762400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr18:25761800-25762600	Enhancers	HUES6 Cell Line	embryonic stem cell

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