Variant report

Variant	rs9946242
Chromosome Location	chr18:8290747-8290748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8289500..8292499-chr18:8294352..8295953,2	K562	blood:
2	chr18:8290482..8292499-chr18:8294352..8296889,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16953398	1.00[EUR][1000 genomes]
rs16953436	1.00[EUR][1000 genomes]
rs2155754	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56359936	1.00[EUR][1000 genomes]
rs56833614	1.00[EUR][1000 genomes]
rs59280133	1.00[EUR][1000 genomes]
rs61436863	1.00[EUR][1000 genomes]
rs641358	1.00[EUR][1000 genomes]
rs6506581	1.00[EUR][1000 genomes]
rs7230842	1.00[CHB][hapmap]
rs7231964	1.00[EUR][1000 genomes]
rs7232155	1.00[EUR][1000 genomes]
rs7243209	1.00[CHB][hapmap]
rs73384215	1.00[EUR][1000 genomes]
rs73384258	1.00[EUR][1000 genomes]
rs73384260	1.00[EUR][1000 genomes]
rs73384266	1.00[EUR][1000 genomes]
rs73384296	1.00[EUR][1000 genomes]
rs73939447	1.00[EUR][1000 genomes]
rs9948640	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458018	chr18:8110805-8645907	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv576426	chr18:8110805-8645907	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1057288	chr18:8218725-8351340	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv543639	chr18:8218725-8351340	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3351324	chr18:8250514-8405140	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1058445	chr18:8270681-8421249	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	esv275400	chr18:8288568-8290747	Flanking Active TSS Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8265400-8296600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr18:8270800-8297400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:8275200-8296400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr18:8284600-8298800	Weak transcription	HepG2	liver
5	chr18:8284600-8300600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr18:8284800-8296200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr18:8284800-8296400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:8284800-8296600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr18:8284800-8301000	Weak transcription	Osteobl	bone
10	chr18:8285600-8292800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr18:8286400-8296200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:8286400-8298400	Weak transcription	Gastric	stomach
13	chr18:8286600-8291000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr18:8286600-8292000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr18:8286800-8296400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr18:8287400-8296600	Weak transcription	Thymus	Thymus
17	chr18:8287800-8306800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr18:8288200-8292200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr18:8288200-8292600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:8288400-8297800	Weak transcription	A549	lung
21	chr18:8289000-8300600	Weak transcription	Spleen	Spleen
22	chr18:8289000-8301600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr18:8289000-8308200	Weak transcription	Psoas Muscle	Psoas
24	chr18:8289200-8291800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr18:8289200-8295000	Weak transcription	Aorta	Aorta
26	chr18:8289200-8295000	Weak transcription	Fetal Lung	lung
27	chr18:8289200-8296400	Weak transcription	Left Ventricle	heart
28	chr18:8289200-8296400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr18:8289200-8296400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr18:8289200-8296600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr18:8289200-8297000	Weak transcription	Lung	lung
32	chr18:8289200-8299400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr18:8289200-8300400	Weak transcription	Fetal Brain Female	brain
34	chr18:8289200-8300400	Weak transcription	Fetal Heart	heart
35	chr18:8289200-8300800	Weak transcription	Pancreas	Pancrea
36	chr18:8289200-8301600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr18:8289200-8319400	Weak transcription	Right Ventricle	heart
38	chr18:8289200-8327400	Weak transcription	Fetal Stomach	stomach
39	chr18:8289200-8329400	Weak transcription	Fetal Muscle Leg	muscle
40	chr18:8289400-8295000	Weak transcription	Adipose Nuclei	Adipose
41	chr18:8289400-8296400	Weak transcription	Brain Anterior Caudate	brain
42	chr18:8289400-8298600	Weak transcription	Liver	Liver
43	chr18:8289800-8291400	Enhancers	Primary hematopoietic stem cells	blood
44	chr18:8289800-8291400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr18:8290000-8291400	Enhancers	Brain Germinal Matrix	brain
46	chr18:8290000-8292000	Weak transcription	Ovary	ovary
47	chr18:8290200-8290800	Enhancers	Fetal Brain Male	brain
48	chr18:8290200-8291000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr18:8290600-8290800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr18:8290600-8291400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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