Variant report

Variant	rs9946895
Chromosome Location	chr18:10136017-10136018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:10134410..10137030-chr18:10138779..10140761,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28626185	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9960381	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9967192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9967550	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14276	chr18:10134666-10145472	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3410028	chr18:10134811-10145112	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:10132400-10137400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr18:10132400-10138600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr18:10132400-10139800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:10132600-10139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr18:10132600-10139800	Weak transcription	HSMM	muscle
6	chr18:10133000-10139800	Weak transcription	Pancreas	Pancrea
7	chr18:10133400-10140400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:10134600-10139200	Weak transcription	Fetal Thymus	thymus
9	chr18:10134600-10139600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr18:10134600-10139600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr18:10134600-10139800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr18:10134600-10139800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr18:10134600-10140200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr18:10135000-10136200	Enhancers	NHDF-Ad	bronchial
15	chr18:10135000-10136200	Enhancers	Osteobl	bone
16	chr18:10135000-10136400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr18:10135200-10136200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr18:10135200-10139400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr18:10135800-10139400	Weak transcription	NH-A	brain
20	chr18:10136000-10136400	Enhancers	NHEK	skin
21	chr18:10136000-10139600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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