Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr18:29526507-29526984	H1-hESC	embryonic stem cell:	n/a	n/a
2	HDAC2	chr18:29526641-29527008	H1-hESC	embryonic stem cell:	n/a	n/a
3	TEAD4	chr18:29526660-29527073	H1-hESC	embryonic stem cell:	n/a	n/a
4	CHD2	chr18:29526373-29526887	H1-hESC	embryonic stem cell:	n/a	n/a
5	TBP	chr18:29526659-29526886	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr18:29526686-29527108	H1-hESC	embryonic stem cell:	n/a	n/a
7	TCF12	chr18:29526663-29526853	H1-hESC	embryonic stem cell:	n/a	n/a
8	TEAD4	chr18:29526674-29527016	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29521977..29523993-chr18:29524997..29527135,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28420519	1.00[EUR][1000 genomes]
rs28473031	1.00[EUR][1000 genomes]
rs28504474	1.00[EUR][1000 genomes]
rs28524484	1.00[EUR][1000 genomes]
rs28760310	1.00[EUR][1000 genomes]
rs59908498	1.00[EUR][1000 genomes]
rs7235871	1.00[EUR][1000 genomes]
rs7244322	0.91[EUR][1000 genomes]
rs73411516	1.00[EUR][1000 genomes]
rs8084534	0.81[EUR][1000 genomes]
rs8084615	1.00[EUR][1000 genomes]
rs8085869	1.00[EUR][1000 genomes]
rs8086361	0.91[EUR][1000 genomes]
rs8098568	1.00[EUR][1000 genomes]
rs9304106	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9949329	1.00[EUR][1000 genomes]
rs9952486	1.00[EUR][1000 genomes]
rs9952626	1.00[EUR][1000 genomes]
rs9954954	1.00[EUR][1000 genomes]
rs9956632	1.00[EUR][1000 genomes]
rs9963080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9965666	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29524600-29530600	Weak transcription	Brain Angular Gyrus	brain
2	chr18:29524800-29530800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:29525000-29527000	Weak transcription	Fetal Heart	heart
4	chr18:29525000-29527800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr18:29525000-29530400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:29525000-29530400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:29525200-29527800	Weak transcription	HepG2	liver
8	chr18:29525400-29527400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr18:29525400-29527600	Weak transcription	Fetal Intestine Large	intestine
10	chr18:29525400-29527600	Weak transcription	Fetal Intestine Small	intestine
11	chr18:29525400-29528400	Weak transcription	K562	blood
12	chr18:29525600-29527200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr18:29525600-29537400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr18:29525800-29527200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr18:29525800-29530000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr18:29526400-29527000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr18:29526800-29529400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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