Variant report

Variant	rs9951610
Chromosome Location	chr18:8003782-8003783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12103962	0.91[AFR][1000 genomes]
rs2099932	0.89[YRI][hapmap]
rs28367342	0.91[AFR][1000 genomes]
rs28379285	0.83[AFR][1000 genomes]
rs28521877	0.91[AFR][1000 genomes]
rs28526245	0.91[AFR][1000 genomes]
rs28557220	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs28569201	0.91[AFR][1000 genomes]
rs28611270	0.86[AFR][1000 genomes]
rs28709298	0.91[AFR][1000 genomes]
rs73385648	0.91[AFR][1000 genomes]
rs73385649	0.91[AFR][1000 genomes]
rs73385658	0.91[AFR][1000 genomes]
rs73385659	0.91[AFR][1000 genomes]
rs9946952	1.00[YRI][hapmap]
rs9948263	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9950590	0.91[AFR][1000 genomes]
rs9952873	0.91[AFR][1000 genomes]
rs9955097	1.00[YRI][hapmap]
rs9963151	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs9963467	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9965217	1.00[YRI][hapmap]
rs9966934	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv909359	chr18:8001853-8064021	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7987600-8033400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:7999600-8004200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr18:8000000-8004000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr18:8000200-8004200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:8001000-8007600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr18:8001400-8004000	Weak transcription	Left Ventricle	heart
7	chr18:8001400-8004200	Weak transcription	Right Ventricle	heart
8	chr18:8001400-8005600	Weak transcription	Psoas Muscle	Psoas
9	chr18:8001400-8006600	Weak transcription	Lung	lung
10	chr18:8001400-8029200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr18:8001400-8029200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr18:8001600-8003800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr18:8001600-8004000	Weak transcription	Right Atrium	heart
14	chr18:8002000-8006000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr18:8002800-8006400	Weak transcription	A549	lung
16	chr18:8003000-8004000	Weak transcription	Aorta	Aorta
17	chr18:8003200-8004800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr18:8003200-8005400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr18:8003200-8006600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:8003200-8006600	Enhancers	Brain Germinal Matrix	brain
21	chr18:8003400-8004200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr18:8003400-8004200	Enhancers	Gastric	stomach
23	chr18:8003400-8006800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr18:8003600-8003800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr18:8003600-8003800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:8003600-8004000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr18:8003600-8004000	Enhancers	Osteobl	bone
28	chr18:8003600-8004200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr18:8003600-8004400	Enhancers	H9 Cell Line	embryonic stem cell
30	chr18:8003600-8004400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr18:8003600-8004400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr18:8003600-8004600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr18:8003600-8004600	Enhancers	Fetal Lung	lung
34	chr18:8003600-8004800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr18:8003600-8004800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr18:8003600-8004800	Enhancers	NH-A	brain
37	chr18:8003600-8005000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr18:8003600-8005000	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr18:8003600-8005200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr18:8003600-8006800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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