Variant report

Variant	rs9951865
Chromosome Location	chr18:13264180-13264181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13246195..13248489-chr18:13263475..13266169,2	MCF-7	breast:
2	chr18:13263986..13266782-chr18:13271778..13275109,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28499003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9951616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3372035	chr18:13260052-13264450	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3405323	chr18:13261252-13267450	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13243600-13278200	Weak transcription	Dnd41	blood
2	chr18:13253000-13267800	Weak transcription	Gastric	stomach
3	chr18:13256800-13268400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:13258600-13268600	Enhancers	Right Ventricle	heart
5	chr18:13259200-13280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr18:13259800-13267800	Enhancers	Fetal Brain Male	brain
7	chr18:13260000-13266200	Enhancers	Rectal Smooth Muscle	rectum
8	chr18:13260800-13268200	Weak transcription	Liver	Liver
9	chr18:13261200-13264200	Weak transcription	Psoas Muscle	Psoas
10	chr18:13261200-13266000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:13261200-13266200	Weak transcription	Pancreas	Pancrea
12	chr18:13261200-13268200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr18:13261200-13282200	Weak transcription	Small Intestine	intestine
14	chr18:13261400-13265600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr18:13261400-13266000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr18:13261400-13268000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr18:13261600-13264200	Weak transcription	Brain Germinal Matrix	brain
18	chr18:13261600-13265600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr18:13261600-13265800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr18:13261800-13267000	Weak transcription	Fetal Kidney	kidney
21	chr18:13262000-13267800	Weak transcription	Ovary	ovary
22	chr18:13262200-13264200	Weak transcription	Aorta	Aorta
23	chr18:13262200-13264400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr18:13262200-13265200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr18:13262200-13265200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr18:13262200-13265200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr18:13262200-13265600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr18:13262200-13265600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr18:13262200-13266600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr18:13262200-13268200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr18:13262200-13270000	Weak transcription	Stomach Mucosa	stomach
32	chr18:13262400-13264200	Weak transcription	Adipose Nuclei	Adipose
33	chr18:13262400-13264200	Weak transcription	Brain Substantia Nigra	brain
34	chr18:13262400-13264200	Weak transcription	Fetal Lung	lung
35	chr18:13262400-13264400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr18:13262400-13265200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr18:13262400-13265400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr18:13262400-13265600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr18:13262400-13267200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr18:13262400-13267200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr18:13262400-13267400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr18:13262400-13267400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr18:13262400-13267400	Weak transcription	Colonic Mucosa	Colon
44	chr18:13262400-13267600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr18:13262400-13267800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr18:13262600-13264600	Weak transcription	Primary T cells from cord blood	blood
47	chr18:13262800-13266200	Enhancers	Colon Smooth Muscle	Colon
48	chr18:13263200-13264400	Enhancers	Fetal Thymus	thymus
49	chr18:13263200-13266000	Weak transcription	Lung	lung
50	chr18:13263200-13268600	Enhancers	Left Ventricle	heart

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