Variant report

Variant	rs9952113
Chromosome Location	chr18:43912764-43912765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6507696	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8086538	0.83[AMR][1000 genomes]
rs8098098	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819321	chr18:43909994-43930972	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1822108	chr18:43909994-43930972	Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1821757	chr18:43910908-43914085	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43912200-43912800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:43912200-43913200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:43912400-43912800	Enhancers	Hela-S3	cervix
4	chr18:43912400-43913000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:43912400-43913000	Enhancers	Fetal Brain Male	brain
6	chr18:43912400-43913000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr18:43912400-43913200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:43912400-43913400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:43912400-43913400	Enhancers	Right Ventricle	heart
10	chr18:43912600-43912800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr18:43912600-43912800	Enhancers	Fetal Brain Female	brain
12	chr18:43912600-43912800	Enhancers	Dnd41	blood
13	chr18:43912600-43913000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr18:43912600-43913200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
15	chr18:43912600-43913200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
16	chr18:43912600-43913200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr18:43912600-43913400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr18:43912600-43913800	Flanking Active TSS	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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