Variant report

Variant	rs9955082
Chromosome Location	chr18:38891869-38891870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11877923	0.85[AFR][1000 genomes]
rs16974379	0.85[AFR][1000 genomes]
rs16974401	0.85[AFR][1000 genomes]
rs59169117	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv833629	chr18:38791940-38959145	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv833630	chr18:38817119-39012222	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1792942	chr18:38843538-38941569	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
7	esv1827680	chr18:38843538-38941569	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
8	esv1836442	chr18:38843538-38941569	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:38890200-38899600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:38890400-38892400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr18:38890400-38892400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:38890800-38892800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:38890800-38893200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:38891000-38893000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:38891200-38892200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:38891200-38892400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr18:38891200-38892800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:38891200-38892800	Enhancers	Brain Germinal Matrix	brain
11	chr18:38891200-38897000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr18:38891400-38892200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr18:38891400-38892400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr18:38891600-38892200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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