Variant report

Variant	rs9955282
Chromosome Location	chr18:11925276-11925277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr18:11925182-11925329	HepG2	liver:	n/a	n/a
2	MYC	chr18:11925015-11925488	MCF10A-Er-Src	breast:	n/a	n/a
3	TCF7L2	chr18:11925238-11925349	Hela-S3	cervix:	n/a	n/a
4	STAT3	chr18:11925071-11925500	MCF10A-Er-Src	breast:	n/a	chr18:11925306-11925317
5	NR3C1	chr18:11925202-11925372	A549	lung:	n/a	n/a
6	FOXA2	chr18:11925089-11925425	HepG2	liver:	n/a	n/a
7	BHLHE40	chr18:11925071-11925380	HepG2	liver:	n/a	n/a
8	POLR2A	chr18:11925173-11925276	MCF10A-Er-Src	breast:	n/a	n/a
9	MYC	chr18:11925153-11925342	K562	blood:	n/a	n/a
10	MXI1	chr18:11925167-11925315	HepG2	liver:	n/a	n/a
11	MAX	chr18:11925060-11925404	HepG2	liver:	n/a	n/a
12	STAT3	chr18:11925206-11925406	Hela-S3	cervix:	n/a	chr18:11925306-11925317
13	CEBPB	chr18:11925150-11925451	K562	blood:	n/a	n/a
14	POLR2A	chr18:11925030-11925359	MCF10A-Er-Src	breast:	n/a	n/a
15	JUND	chr18:11925170-11925352	HepG2	liver:	n/a	n/a
16	CEBPB	chr18:11925139-11925444	IMR90	lung:	n/a	n/a
17	GATA1	chr18:11925228-11926398	PBDE	blood:	n/a	n/a
18	E2F4	chr18:11925124-11925427	MCF10A-Er-Src	breast:	n/a	n/a
19	STAT3	chr18:11925046-11925539	MCF10A-Er-Src	breast:	n/a	chr18:11925306-11925317
20	FOS	chr18:11925046-11925499	MCF10A-Er-Src	breast:	n/a	n/a
21	CEBPB	chr18:11925083-11925476	HepG2	liver:	n/a	n/a
22	EP300	chr18:11925116-11925403	HepG2	liver:	n/a	n/a
23	STAT3	chr18:11925025-11925513	MCF10A-Er-Src	breast:	n/a	chr18:11925306-11925317
24	FOS	chr18:11925147-11925447	MCF10A-Er-Src	breast:	n/a	n/a
25	FOS	chr18:11925098-11925492	MCF10A-Er-Src	breast:	n/a	n/a
26	MYC	chr18:11925018-11925447	MCF10A-Er-Src	breast:	n/a	n/a
27	ARID3A	chr18:11925142-11925504	HepG2	liver:	n/a	n/a
28	MAX	chr18:11925003-11925382	K562	blood:	n/a	n/a
29	CEBPB	chr18:11925205-11925380	HepG2	liver:	n/a	n/a
30	FOXA1	chr18:11925067-11925369	A549	lung:	n/a	n/a
31	FOXA1	chr18:11925099-11925365	HepG2	liver:	n/a	n/a
32	STAT3	chr18:11925030-11925563	MCF10A-Er-Src	breast:	n/a	chr18:11925306-11925317
33	MAX	chr18:11925029-11925352	HepG2	liver:	n/a	n/a
34	FOS	chr18:11925081-11925492	MCF10A-Er-Src	breast:	n/a	n/a
35	EP300	chr18:11925182-11925384	HepG2	liver:	n/a	n/a
36	CEBPB	chr18:11925146-11925443	Hela-S3	cervix:	n/a	n/a
37	RAD21	chr18:11925274-11925338	HepG2	liver:	n/a	n/a
38	CEBPB	chr18:11925116-11925503	HepG2	liver:	n/a	n/a
39	CEBPB	chr18:11925209-11925409	A549	lung:	n/a	n/a
40	CEBPB	chr18:11925203-11925416	MCF-7	breast:	n/a	n/a
41	NR3C1	chr18:11925094-11925507	A549	lung:	n/a	n/a
42	NR3C1	chr18:11925105-11925423	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11907322..11909854-chr18:11924483..11927242,3	K562	blood:

Variant related genes	Relation type
ENSG00000267661	TF binding region
ENSG00000154889	Chromatin interaction
ENSG00000273141	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs62097420	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62097421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62097422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62097423	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62097424	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62097428	0.83[ASN][1000 genomes]
rs62097429	0.83[ASN][1000 genomes]
rs62097430	0.83[ASN][1000 genomes]
rs62097431	0.83[ASN][1000 genomes]
rs62097432	0.83[ASN][1000 genomes]
rs8096277	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9951237	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv2758470	chr18:11897023-12076102	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	esv2758713	chr18:11897023-12076102	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv909383	chr18:11904266-11926730	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv909384	chr18:11907374-12101109	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
8	nsv1063339	chr18:11909588-11979264	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv576495	chr18:11917410-11986557	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv962489	chr18:11920674-11929409	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11922200-11927200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr18:11923200-11927600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr18:11924000-11925800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr18:11924000-11926200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr18:11925200-11926400	Enhancers	Hela-S3	cervix
6	chr18:11925200-11927400	Weak transcription	Fetal Lung	lung
7	chr18:11925200-11927600	Enhancers	HepG2	liver
8	chr18:11925200-11927800	Enhancers	K562	blood

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