Variant report

Variant	rs9957006
Chromosome Location	chr18:11755166-11755167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11754391..11755995-chr18:11847330..11848928,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11873821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052660	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2052661	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2113738	0.94[ASN][1000 genomes]
rs2113739	0.94[ASN][1000 genomes]
rs28415243	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2866279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58518871	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505671	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505674	0.92[ASN][1000 genomes]
rs7227416	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7233178	0.91[ASN][1000 genomes]
rs7359728	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8084370	0.87[AFR][1000 genomes]
rs8087001	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8090628	0.94[ASN][1000 genomes]
rs8091359	0.88[ASN][1000 genomes]
rs8095592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9949045	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9951752	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9954406	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9957311	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11751600-11756200	Active TSS	Brain Anterior Caudate	brain
2	chr18:11752800-11767200	Weak transcription	Aorta	Aorta
3	chr18:11752800-11774000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:11753000-11757200	Weak transcription	Pancreas	Pancrea
5	chr18:11753000-11759400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:11753000-11760800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr18:11753000-11760800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr18:11753000-11767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr18:11753000-11767200	Weak transcription	Esophagus	oesophagus
10	chr18:11753000-11768000	Weak transcription	HMEC	breast
11	chr18:11753000-11774800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr18:11753000-11775400	Weak transcription	Gastric	stomach
13	chr18:11753200-11755600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr18:11754000-11765400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr18:11754800-11756000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr18:11754800-11758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr18:11755000-11765400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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