Variant report

Variant	rs9957582
Chromosome Location	chr18:30196804-30196805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs162420	0.86[YRI][hapmap]
rs16963581	0.87[EUR][1000 genomes]
rs2132820	0.87[EUR][1000 genomes]
rs28446378	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28764771	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs330297	0.83[YRI][hapmap]
rs330298	0.83[YRI][hapmap]
rs58245863	0.87[EUR][1000 genomes]
rs7232861	0.87[EUR][1000 genomes]
rs73955245	0.87[EUR][1000 genomes]
rs8083035	0.87[EUR][1000 genomes]
rs8083282	0.87[EUR][1000 genomes]
rs9945911	0.87[EUR][1000 genomes]
rs9959025	0.87[EUR][1000 genomes]
rs9973067	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909524	chr18:30115418-30196804	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2760497	chr18:30195190-30206210	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv527853	chr18:30196804-30206210	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2761998	chr18:30196804-30209318	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30196800-30197000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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