Variant report

Variant	rs9958368
Chromosome Location	chr18:29529765-29529766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29522626..29525135-chr18:29528415..29529942,2	K562	blood:

Variant related genes	Relation type
ENSG00000153339	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10853415	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10853416	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11081730	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11662341	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12604640	0.80[EUR][1000 genomes]
rs12957331	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12969126	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1680643	0.85[EUR][1000 genomes]
rs35203717	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3826612	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3865397	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4513172	0.80[EUR][1000 genomes]
rs5011500	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs521491	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs549818	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs563247	0.84[EUR][1000 genomes]
rs614342	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs639595	0.81[EUR][1000 genomes]
rs6506944	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6506945	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6506946	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs675570	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67874605	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7229979	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7230326	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7237474	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7239098	0.80[EUR][1000 genomes]
rs7239951	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8088396	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs930018	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9966530	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065285	chr18:29527884-29614986	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29524600-29530600	Weak transcription	Brain Angular Gyrus	brain
2	chr18:29524800-29530800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:29525000-29530400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:29525000-29530400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:29525600-29537400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr18:29525800-29530000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr18:29527200-29530000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr18:29527400-29530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr18:29528200-29530200	Weak transcription	HepG2	liver
10	chr18:29528800-29530400	Weak transcription	Fetal Intestine Small	intestine
11	chr18:29528800-29530600	Weak transcription	Fetal Intestine Large	intestine
12	chr18:29528800-29533400	Weak transcription	K562	blood
13	chr18:29529200-29529800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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