Variant report

Variant	rs9958414
Chromosome Location	chr18:6836780-6836781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr18:6836444-6836794	MCF10A-Er-Src	breast:	n/a	n/a
2	ATF1	chr18:6836325-6836793	K562	blood:	n/a	n/a
3	FOS	chr18:6836396-6836795	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr18:6836310-6836796	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr18:6836478-6836795	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr18:6836413-6836862	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr18:6836391-6836794	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr18:6836351-6836805	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ARHGAP28	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9956390	0.81[EUR][1000 genomes]
rs9959760	0.95[EUR][1000 genomes]
rs9960002	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059678	chr18:6155114-6838290	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv916883	chr18:6299209-7244642	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv3529901	chr18:6537233-6851509	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3529902	chr18:6537233-6851509	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1063762	chr18:6542534-7382339	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv543630	chr18:6542534-7382339	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1060757	chr18:6682974-7051982	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv543631	chr18:6682974-7051982	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv1064175	chr18:6740267-7384528	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	esv34611	chr18:6741970-6838290	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv576397	chr18:6758921-7036683	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	esv2758469	chr18:6762909-6943645	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
13	esv2758711	chr18:6762909-6943645	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
14	nsv1059956	chr18:6786579-7382339	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv543632	chr18:6786579-7382339	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:6818000-6854600	Weak transcription	Spleen	Spleen
2	chr18:6822800-6851000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:6823200-6852800	Weak transcription	Fetal Stomach	stomach
4	chr18:6823400-6838400	Weak transcription	Left Ventricle	heart
5	chr18:6825800-6837800	Weak transcription	Fetal Kidney	kidney
6	chr18:6825800-6851200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr18:6826000-6850600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr18:6826000-6850800	Weak transcription	HSMM	muscle
9	chr18:6826000-6851000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr18:6826000-6851000	Weak transcription	Adipose Nuclei	Adipose
11	chr18:6830800-6850600	Weak transcription	Ovary	ovary
12	chr18:6832200-6839400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr18:6833600-6841000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr18:6834600-6854600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr18:6835000-6850400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:6835200-6837400	Genic enhancers	Fetal Lung	lung
17	chr18:6835800-6837200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr18:6836000-6836800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr18:6836000-6836800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr18:6836000-6836800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr18:6836000-6837000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr18:6836000-6837000	Enhancers	HMEC	breast
23	chr18:6836000-6837400	Enhancers	NHEK	skin
24	chr18:6836000-6838400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr18:6836000-6838400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr18:6836200-6837600	Strong transcription	HSMMtube	muscle
27	chr18:6836200-6841000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr18:6836400-6836800	Flanking Active TSS	K562	blood
29	chr18:6836400-6846000	Weak transcription	Fetal Muscle Leg	muscle
30	chr18:6836600-6836800	Weak transcription	Right Atrium	heart
31	chr18:6836600-6850600	Weak transcription	Placenta	Placenta
32	chr18:6836600-6851600	Weak transcription	Fetal Brain Male	brain
33	chr18:6836600-6854600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr18:6836600-6854600	Weak transcription	Gastric	stomach

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