Variant report

Variant	rs9959345
Chromosome Location	chr18:24674519-24674520
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs2339259	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28374128	0.91[ASN][1000 genomes]
rs28377196	0.91[ASN][1000 genomes]
rs28407882	0.81[ASN][1000 genomes]
rs28421022	0.91[ASN][1000 genomes]
rs28422861	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28430781	0.81[ASN][1000 genomes]
rs28441579	1.00[ASN][1000 genomes]
rs28447060	0.91[ASN][1000 genomes]
rs28527345	0.91[ASN][1000 genomes]
rs28540832	0.91[ASN][1000 genomes]
rs28592609	0.91[ASN][1000 genomes]
rs28607703	1.00[ASN][1000 genomes]
rs28625571	0.91[ASN][1000 genomes]
rs28626613	0.91[ASN][1000 genomes]
rs28628505	0.91[ASN][1000 genomes]
rs28636962	0.91[ASN][1000 genomes]
rs28638047	0.91[ASN][1000 genomes]
rs28655160	0.91[ASN][1000 genomes]
rs28658184	0.91[ASN][1000 genomes]
rs28659873	0.81[ASN][1000 genomes]
rs28666617	0.91[ASN][1000 genomes]
rs28669309	0.91[ASN][1000 genomes]
rs28675069	0.91[ASN][1000 genomes]
rs28689713	0.91[ASN][1000 genomes]
rs28690572	0.91[ASN][1000 genomes]
rs28693844	0.81[ASN][1000 genomes]
rs28713375	1.00[ASN][1000 genomes]
rs73404849	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73404856	0.81[AFR][1000 genomes]
rs73404857	0.81[AFR][1000 genomes]
rs9944690	0.91[ASN][1000 genomes]
rs9946111	0.91[ASN][1000 genomes]
rs9947740	0.81[ASN][1000 genomes]
rs9947754	0.81[ASN][1000 genomes]
rs9948063	0.91[ASN][1000 genomes]
rs9948516	0.81[ASN][1000 genomes]
rs9948956	0.91[ASN][1000 genomes]
rs9949069	0.83[ASN][1000 genomes]
rs9949945	0.91[ASN][1000 genomes]
rs9950392	0.81[ASN][1000 genomes]
rs9950774	0.91[ASN][1000 genomes]
rs9950985	0.91[ASN][1000 genomes]
rs9951105	0.81[ASN][1000 genomes]
rs9951527	0.91[ASN][1000 genomes]
rs9951666	0.81[ASN][1000 genomes]
rs9952545	0.81[ASN][1000 genomes]
rs9953272	0.91[ASN][1000 genomes]
rs9954010	0.91[ASN][1000 genomes]
rs9955379	0.81[ASN][1000 genomes]
rs9955513	0.91[ASN][1000 genomes]
rs9955608	0.91[ASN][1000 genomes]
rs9955617	0.91[ASN][1000 genomes]
rs9957834	0.91[ASN][1000 genomes]
rs9958309	0.81[ASN][1000 genomes]
rs9958520	0.81[ASN][1000 genomes]
rs9958672	0.91[ASN][1000 genomes]
rs9958959	0.91[ASN][1000 genomes]
rs9959209	0.81[ASN][1000 genomes]
rs9959230	0.81[ASN][1000 genomes]
rs9959270	1.00[ASN][1000 genomes]
rs9959436	0.91[ASN][1000 genomes]
rs9959629	0.91[ASN][1000 genomes]
rs9959749	0.91[ASN][1000 genomes]
rs9960539	0.81[ASN][1000 genomes]
rs9962767	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9963374	1.00[ASN][1000 genomes]
rs9963925	0.81[ASN][1000 genomes]
rs9966121	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24672000-24674600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:24672200-24674600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr18:24674200-24674600	Enhancers	Pancreatic Islets	Pancreatic Islet

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