Variant report

Variant	rs9960460
Chromosome Location	chr18:13309232-13309233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11659221	0.88[CEU][hapmap]
rs11665323	0.88[CEU][hapmap];0.95[GIH][hapmap];0.87[EUR][1000 genomes]
rs4570935	0.89[YRI][hapmap]
rs59370067	0.81[EUR][1000 genomes]
rs7242140	0.86[YRI][hapmap]
rs8087505	0.81[LWK][hapmap];0.86[YRI][hapmap]
rs930797	0.83[LWK][hapmap]
rs930798	0.81[LWK][hapmap];0.86[YRI][hapmap]
rs949259	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2209	chr18:13276410-13316570	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13285000-13316200	Weak transcription	Aorta	Aorta
2	chr18:13295600-13312600	Weak transcription	Dnd41	blood
3	chr18:13298800-13314600	Weak transcription	Fetal Intestine Small	intestine
4	chr18:13303000-13314400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr18:13303200-13312400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr18:13303200-13314400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:13303200-13314600	Weak transcription	Colonic Mucosa	Colon
8	chr18:13303200-13316600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr18:13303200-13318600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr18:13303200-13318600	Weak transcription	Right Atrium	heart
11	chr18:13303400-13314600	Weak transcription	Fetal Lung	lung
12	chr18:13303400-13314600	Weak transcription	Fetal Stomach	stomach
13	chr18:13303600-13318600	Weak transcription	Colon Smooth Muscle	Colon
14	chr18:13304200-13311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr18:13304400-13313200	Weak transcription	Spleen	Spleen
16	chr18:13304600-13310000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:13304600-13315000	Weak transcription	Brain Hippocampus Middle	brain
18	chr18:13305000-13315000	Weak transcription	Brain Anterior Caudate	brain
19	chr18:13306400-13311000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr18:13306800-13315800	Weak transcription	Adipose Nuclei	Adipose
21	chr18:13307200-13309400	Enhancers	Fetal Thymus	thymus
22	chr18:13307200-13310200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr18:13307800-13311600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr18:13308000-13309800	Enhancers	Primary T cells from cord blood	blood
25	chr18:13308000-13309800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr18:13308200-13310800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr18:13308200-13310800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr18:13308400-13309600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr18:13308400-13309600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr18:13308400-13310200	Enhancers	Fetal Heart	heart
31	chr18:13308400-13311800	Genic enhancers	Thymus	Thymus
32	chr18:13308600-13312400	Weak transcription	Liver	Liver
33	chr18:13308600-13314400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr18:13308600-13314600	Weak transcription	Brain Germinal Matrix	brain
35	chr18:13308800-13312400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr18:13308800-13313200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr18:13309000-13310600	Enhancers	Right Ventricle	heart
38	chr18:13309000-13312600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr18:13309000-13313000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr18:13309000-13315800	Weak transcription	Small Intestine	intestine
41	chr18:13309200-13309400	Enhancers	Fetal Muscle Leg	muscle
42	chr18:13309200-13309400	Enhancers	Pancreas	Pancrea
43	chr18:13309200-13310200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr18:13309200-13310600	Enhancers	Left Ventricle	heart
45	chr18:13309200-13310800	Enhancers	Primary hematopoietic stem cells	blood
46	chr18:13309200-13312600	Weak transcription	Fetal Brain Female	brain

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