Variant report

Variant	rs9960693
Chromosome Location	chr18:11115647-11115648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9948067	1.00[AFR][1000 genomes]
rs9952136	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11104800-11128400	Weak transcription	Fetal Muscle Leg	muscle
2	chr18:11105000-11116600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr18:11111600-11128600	Weak transcription	Fetal Stomach	stomach
4	chr18:11112400-11119600	Enhancers	Hela-S3	cervix
5	chr18:11113800-11116400	Weak transcription	GM12878-XiMat	blood
6	chr18:11114400-11115800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr18:11114600-11116000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr18:11115000-11117800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr18:11115000-11117800	Weak transcription	Liver	Liver
10	chr18:11115000-11119600	Weak transcription	Fetal Intestine Small	intestine
11	chr18:11115200-11117200	Weak transcription	Fetal Lung	lung
12	chr18:11115200-11118200	Weak transcription	Fetal Intestine Large	intestine
13	chr18:11115200-11119600	Weak transcription	A549	lung
14	chr18:11115400-11119400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr18:11115600-11117000	Weak transcription	HepG2	liver
16	chr18:11115600-11119600	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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