Variant report

Variant	rs9961861
Chromosome Location	chr18:28687542-28687543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16948612	1.00[AMR][1000 genomes]
rs2043734	1.00[AMR][1000 genomes]
rs28520988	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28584973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7240259	1.00[AMR][1000 genomes]
rs9946137	1.00[AMR][1000 genomes]
rs9957402	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9957506	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9963657	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9964449	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388313	chr18:28583296-28693160	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28683200-28688400	Weak transcription	Fetal Intestine Small	intestine
2	chr18:28685000-28688400	Weak transcription	K562	blood
3	chr18:28687200-28688000	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links