Variant report

Variant	rs9961878
Chromosome Location	chr18:45334714-45334715
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9304356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9945835	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9952750	1.00[AMR][1000 genomes]
rs9955936	1.00[AMR][1000 genomes]
rs9963052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45326400-45342400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr18:45327400-45358400	Weak transcription	HSMMtube	muscle
3	chr18:45327600-45352600	Weak transcription	Fetal Brain Female	brain
4	chr18:45328600-45351600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr18:45329400-45342000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:45332200-45342200	Weak transcription	Primary T cells from cord blood	blood
7	chr18:45332200-45352400	Weak transcription	Adipose Nuclei	Adipose
8	chr18:45332600-45351800	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:45332800-45351600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr18:45333000-45357200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr18:45333200-45345600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:45333800-45351600	Weak transcription	A549	lung
13	chr18:45334600-45349800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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