Variant report

Variant	rs9963005
Chromosome Location	chr18:29490177-29490178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29488584..29491075-chr18:29521589..29525016,4	K562	blood:

Variant related genes	Relation type
ENSG00000263823	Chromatin interaction
ENSG00000153339	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11874448	1.00[CHD][hapmap]
rs12326524	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29406200-29518600	Weak transcription	Fetal Brain Male	brain
2	chr18:29417600-29515600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:29431800-29499000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr18:29431800-29512600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr18:29432600-29507600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:29432600-29521400	Weak transcription	Stomach Mucosa	stomach
7	chr18:29457000-29505800	Weak transcription	Brain Angular Gyrus	brain
8	chr18:29457200-29493200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr18:29460400-29501200	Strong transcription	Liver	Liver
10	chr18:29461400-29494200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr18:29461600-29491200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr18:29461600-29518600	Weak transcription	Psoas Muscle	Psoas
13	chr18:29462000-29520000	Weak transcription	Fetal Heart	heart
14	chr18:29463200-29490200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr18:29463400-29509200	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr18:29466400-29490800	Strong transcription	Placenta	Placenta
17	chr18:29468200-29491000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr18:29468800-29492000	Weak transcription	Ovary	ovary
19	chr18:29469000-29511400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr18:29469600-29507000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr18:29472800-29512000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr18:29473200-29490200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr18:29473800-29494800	Strong transcription	Primary B cells from cord blood	blood
24	chr18:29473800-29503400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr18:29474200-29510800	Weak transcription	NH-A	brain
26	chr18:29476000-29491200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr18:29478600-29522000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr18:29479600-29518600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr18:29480200-29491800	Weak transcription	Esophagus	oesophagus
30	chr18:29480200-29492000	Weak transcription	Aorta	Aorta
31	chr18:29480600-29511600	Weak transcription	Pancreas	Pancrea
32	chr18:29480600-29519400	Weak transcription	Spleen	Spleen
33	chr18:29480800-29511200	Weak transcription	Hela-S3	cervix
34	chr18:29481400-29511600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr18:29481800-29500400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr18:29481800-29503000	Weak transcription	Colon Smooth Muscle	Colon
37	chr18:29482000-29506000	Weak transcription	A549	lung
38	chr18:29482000-29511200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr18:29482200-29511200	Weak transcription	NHLF	lung
40	chr18:29482400-29511400	Weak transcription	Brain Hippocampus Middle	brain
41	chr18:29482400-29522000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr18:29482600-29492000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr18:29482600-29506800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr18:29482600-29521600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr18:29482800-29492200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr18:29482800-29521600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr18:29483200-29506600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr18:29483200-29511200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr18:29483400-29491000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr18:29483400-29499200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links