Variant report
| Variant | rs9963799 |
|---|---|
| Chromosome Location | chr18:27951304-27951305 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-DSG1-11 | chr18:27951210-27951464 | expReg_chr18_1602_+ |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs4383226 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4474765 | 0.86[AFR][1000 genomes] |
| rs57253104 | 0.87[AFR][1000 genomes] |
| rs59381348 | 0.87[AFR][1000 genomes] |
| rs7226825 | 0.81[AFR][1000 genomes] |
| rs73409712 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1057946 | chr18:27239754-28146129 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription | Chromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv576600 | chr18:27423375-28197518 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv909501 | chr18:27797293-27976234 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive regionlncRNAmiRNA | n/a | inside rSNPs | diseases |
| 4 | nsv909504 | chr18:27819663-27959102 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNAmiRNA | n/a | inside rSNPs | diseases |
| 5 | nsv909505 | chr18:27836611-27959102 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNAmiRNA | n/a | inside rSNPs | diseases |
| 6 | nsv909506 | chr18:27858581-27959102 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNAmiRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
