Variant report

Variant	rs9965555
Chromosome Location	chr18:11587225-11587226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11080526	0.95[EUR][1000 genomes]
rs12456013	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2219751	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28498105	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4797559	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6505664	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7238140	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8091184	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9961304	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1057976	chr18:11251898-11664914	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv543650	chr18:11251898-11664914	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
6	nsv909381	chr18:11431945-11609487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv543652	chr18:11581166-11658400	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11585400-11589000	Enhancers	Dnd41	blood
2	chr18:11585600-11589000	Enhancers	Fetal Thymus	thymus
3	chr18:11586000-11589000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr18:11586200-11588600	Enhancers	Primary T cells from cord blood	blood
5	chr18:11586200-11588800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr18:11586200-11588800	Enhancers	Thymus	Thymus
7	chr18:11586400-11588800	Enhancers	Fetal Lung	lung
8	chr18:11586600-11587400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr18:11586600-11588400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr18:11586800-11587600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr18:11586800-11588600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr18:11586800-11588600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr18:11586800-11588600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr18:11587000-11587400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr18:11587000-11588000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr18:11587000-11588200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr18:11587000-11588200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr18:11587000-11588400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr18:11587200-11587600	Enhancers	Brain Germinal Matrix	brain
20	chr18:11587200-11588000	Enhancers	Primary hematopoietic stem cells	blood
21	chr18:11587200-11588800	Enhancers	Fetal Muscle Leg	muscle

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