Variant report

Variant	rs9966712
Chromosome Location	chr18:7983468-7983469
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2099932	0.83[AMR][1000 genomes]
rs28367342	0.83[AMR][1000 genomes]
rs28379285	0.83[AMR][1000 genomes]
rs28523954	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28569201	0.83[AMR][1000 genomes]
rs28644497	1.00[AMR][1000 genomes]
rs28757770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6506541	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7239724	1.00[AMR][1000 genomes]
rs7239846	1.00[AMR][1000 genomes]
rs7241071	1.00[AMR][1000 genomes]
rs9944589	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9945054	1.00[AMR][1000 genomes]
rs9948263	0.83[AMR][1000 genomes]
rs9949297	0.83[AMR][1000 genomes]
rs9951398	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9952921	0.83[AMR][1000 genomes]
rs9955097	0.83[AMR][1000 genomes]
rs9955973	0.83[AMR][1000 genomes]
rs9958058	0.83[AMR][1000 genomes]
rs9963467	0.83[AMR][1000 genomes]
rs9963748	1.00[AMR][1000 genomes]
rs9965536	1.00[AMR][1000 genomes]
rs9967327	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7959000-7987400	Weak transcription	Ovary	ovary
2	chr18:7964800-7984200	Weak transcription	Adipose Nuclei	Adipose
3	chr18:7966000-7987000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:7966000-7989600	Weak transcription	Lung	lung
5	chr18:7976400-7986600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr18:7977800-7985800	Weak transcription	Brain Anterior Caudate	brain
7	chr18:7977800-7986600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:7978200-7986200	Weak transcription	Brain Hippocampus Middle	brain
9	chr18:7978200-7986400	Weak transcription	Aorta	Aorta
10	chr18:7978200-7986400	Weak transcription	Right Atrium	heart
11	chr18:7979600-7983800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:7980200-7985800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr18:7981200-7995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr18:7982600-7984400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr18:7982800-7984400	Enhancers	A549	lung
16	chr18:7982800-7986400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr18:7982800-7986600	Weak transcription	Osteobl	bone
18	chr18:7982800-7986800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr18:7983000-7986800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr18:7983200-7987000	Weak transcription	NH-A	brain
21	chr18:7983400-7984200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr18:7983400-7984400	Enhancers	Fetal Heart	heart
23	chr18:7983400-7986400	Weak transcription	Left Ventricle	heart

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