Variant report

Variant	rs9968280
Chromosome Location	chr4:143477464-143477465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143477154..143478767-chr4:143496726..143498500,2	MCF-7	breast:
2	chr4:143475822..143478119-chr4:143482410..143485244,3	MCF-7	breast:
3	chr4:143461464..143464431-chr4:143476844..143478769,2	MCF-7	breast:
4	chr4:143471348..143473653-chr4:143477211..143480066,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10008043	0.87[AFR][1000 genomes]
rs28705195	0.81[AFR][1000 genomes]
rs9993256	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143468800-143480000	Weak transcription	Left Ventricle	heart
2	chr4:143470400-143478000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr4:143470800-143478600	Weak transcription	Pancreas	Pancrea
4	chr4:143471200-143481800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:143471400-143477600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:143471400-143477600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:143471400-143481800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:143471600-143480000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:143472200-143478600	Weak transcription	Fetal Heart	heart
10	chr4:143472400-143481200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:143472600-143477800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:143472600-143486800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:143473000-143479000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:143475600-143477600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:143475600-143480400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr4:143475600-143488000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:143476200-143477800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr4:143476800-143478600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:143477000-143477800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:143477000-143477800	Enhancers	HMEC	breast
21	chr4:143477000-143478000	Enhancers	NHEK	skin
22	chr4:143477200-143477800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:143477200-143477800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:143477200-143478000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:143477200-143478000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:143477200-143478800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr4:143477200-143478800	Enhancers	Fetal Intestine Large	intestine
28	chr4:143477200-143479200	Enhancers	Primary T cells from cord blood	blood
29	chr4:143477200-143479200	Enhancers	Fetal Intestine Small	intestine
30	chr4:143477400-143478400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr4:143477400-143478800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr4:143477400-143479600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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