Variant report

Variant	rs9968320
Chromosome Location	chr4:130325594-130325595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10001834	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11940099	0.82[ASN][1000 genomes]
rs11942882	0.85[AMR][1000 genomes]
rs11942914	0.82[ASN][1000 genomes]
rs13108530	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13135051	0.80[ASN][1000 genomes]
rs13152421	0.82[ASN][1000 genomes]
rs34099241	0.82[ASN][1000 genomes]
rs34714171	0.82[ASN][1000 genomes]
rs35618244	0.80[ASN][1000 genomes]
rs4975219	0.80[ASN][1000 genomes]
rs6845051	0.80[ASN][1000 genomes]
rs71613927	0.82[ASN][1000 genomes]
rs71613928	0.82[ASN][1000 genomes]
rs71613930	0.82[ASN][1000 genomes]
rs71613932	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830060	chr4:130315067-130471025	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130324600-130325600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:130325000-130326800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:130325400-130326000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:130325400-130326000	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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